Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., ATP-dependent DNA helicase UvrD/PcrA, proteobacterial paralog from Variovorax sp. SCN45

 Score =  248 bits (633), Expect = 7e-70
 Identities = 214/682 (31%), Positives = 316/682 (46%), Gaps = 89/682 (13%)

Query: 8   LDGLNDKQREAVA------------APLENLLILAGAGSGKTRVLVHRIAWLMSVEEASP 55
           L  LN+ QR AV             A    LL++AGAGSGKT  L HR+A L++     P
Sbjct: 24  LASLNEAQRAAVEHGVGAAVGAGAQADQRPLLVIAGAGSGKTSTLAHRVAHLIA-GGVDP 82

Query: 56  FSVMAVTFTNKAAAEMRGRIEELM--------HGTASGMWCGTFHGICHRILRAHYLDAK 107
             ++ +TF+ +AA EM  R  +++            S  W GTFHGI  R+LR +     
Sbjct: 83  QRLLLLTFSRRAAQEMGRRAGQVLTKVLGLKSEAPPSLPWAGTFHGIGARLLREYAAQIG 142

Query: 108 LLEDFQIIDSDDQQRLLKRLIKAHNLDDKQWPARQVAWWINNQKDEG----LRPTHINAF 163
           L E+F I D  D + L+   +  H L         ++  +N    +G    +    +N  
Sbjct: 143 LDENFTIHDRGDAEDLMG--LARHELG--------LSSTVNRFPRKGTCLSIYSRCVNTR 192

Query: 164 DPVTQTYLK--------------LYTAYQEACDRAGLVDFAEILLRALELLRGNQHIREH 209
            P+ +   +              L+ AY EA  R  ++D+ ++LL    ++     +  H
Sbjct: 193 APLAEVLRESFPWCGEWEAELKTLFGAYVEAKHRQNVLDYDDLLLYWAGMV-AEPELAAH 251

Query: 210 YQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVGDDDQSIYGWRGARVENIEKFTR 269
             ARF H+LVDE+QDTN +Q + L  +      V +VGDD QSIY +RGA V NI  F  
Sbjct: 252 VGARFDHVLVDEYQDTNLLQASILLALKPDGRGVTVVGDDAQSIYSFRGATVRNILDFPS 311

Query: 270 EF-PSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQLWTD-GLVGEPISVYSAYNEL 327
           +F      + LE+NYRST+ IL+ SN +IA  +ER  K LWTD    G+P+ V    +E 
Sbjct: 312 QFTQDARVVTLERNYRSTQPILDVSNRVIAQAAERHAKTLWTDKPSAGKPLLVL-VPDEA 370

Query: 328 DEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEALLQASLAYRIYGGMRFFERQE 387
            +AR+V  K+   +E G  L   A+L+R +  S  LE  L + ++ +  +GG++F E   
Sbjct: 371 GQARWVADKVLAHREGGLALKSQAVLFRTSTHSAALELELARRNIPFVKFGGLKFLEASH 430

Query: 388 IKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETIRFAARDRGCTLWDASVGLLND 447
           +KD L+ LR   N     A  RV    P G+G  T  T    A D+        V  + D
Sbjct: 431 VKDLLAVLRFAQNPRGRMAGFRVTQLIP-GIGPVT-GTRLLDAMDQAAD----PVAAVRD 484

Query: 448 QVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIE 507
            V    A +  + F     AL    ++ P  V    A     L  +Y+   G + +A +E
Sbjct: 485 FVPPSAARAQWADFATAYEALRSPALEWPADVEVAMAWYQPHLERLYEDTSGVR-RADVE 543

Query: 508 NLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADE------HDDAVQLMTLHS 561
            L  L       E+            FLT   L+  E  +D        +D + L T+HS
Sbjct: 544 QLARLAAGYGSRER------------FLTELTLDPPEATSDRPGPPLLDEDYLILSTIHS 591

Query: 562 AKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAM--------QKLYIT 613
           AKG E+  V ++ V +G  P+ + A+ A  LEEERRL YV MTRA         Q+ Y+T
Sbjct: 592 AKGQEWNSVHVLNVVDGCLPADV-AQSAHELEEERRLLYVAMTRARDHLHLLVPQRFYVT 650

Query: 614 YAEMRRLYGQDKYHKPSRFIRE 635
              +R    +  Y   +RFI +
Sbjct: 651 QQAVRG--DRHLYANRTRFITD 670