Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., ATP-dependent DNA helicase Rep from Variovorax sp. SCN45

 Score =  350 bits (897), Expect = e-100
 Identities = 242/665 (36%), Positives = 346/665 (52%), Gaps = 45/665 (6%)

Query: 10  GLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAA 69
           GLN  Q EAV       L+LAGAGSGKTRV+ H+I  L+      P  + A+TFTNKAAA
Sbjct: 4   GLNPAQLEAVNYMYGPCLVLAGAGSGKTRVITHKIGRLIQ-SGLEPQRIAAITFTNKAAA 62

Query: 70  EMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           EMR R ++L+   A  +   TFH +  R++R       L + F I+DSDD  ++LK    
Sbjct: 63  EMRERAKDLIGKDARKVVVCTFHALGVRMMREDGAVLGLKKAFSILDSDDVTKILKDAGG 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGL--RPTHINAFDPVTQTYLKLYTAYQEACDRAGLV 187
             ++      AR   W I+  K+ GL  +     A D   +   ++   Y+E       V
Sbjct: 123 TTDIAT----ARIWQWTISKWKNMGLNAKQAEAAAVDDNERITARIMAHYEERLQAYQSV 178

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++   L+LL     +R  +QA   HILVDE+QDTNA QY  L+ +AG + +   VG
Sbjct: 179 DFDDLIGMPLKLLYEFPEVRAKWQAALGHILVDEYQDTNATQYEVLKALAGERGHFTAVG 238

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIYGWRGA ++N+ K   +FP++  I+LEQNYRST  IL A+N +I  N +   K 
Sbjct: 239 DDDQSIYGWRGATLDNLRKLPVDFPTLKVIKLEQNYRSTSAILRAANNVIGPNPKLFPKT 298

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT--------LTDCAILYRNNAQ 359
           L+++   GEP+ +  A +EL EA   V++I   +    T          D AILYR N Q
Sbjct: 299 LFSELGEGEPVRIVDADSELHEAERAVARIVSLRAGDATTQGKQYKEFRDFAILYRANHQ 358

Query: 360 SRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLG 419
           +RV E+AL +A + Y++ GG  FF+R EIKD   + RL  N +DD AF R I TP RG+G
Sbjct: 359 ARVFEQALRKAQIPYKVSGGQSFFDRAEIKDLCGWFRLWVNNDDDPAFLRAITTPKRGIG 418

Query: 420 DKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEE-----GID 474
             TL ++   A     +L++A        V+  R    +  F   IN LE       G +
Sbjct: 419 HTTLASLGSFASQYKLSLFEALFSPSLPSVMPKRTLEGIHEFGRYINDLEYRARRTMGAE 478

Query: 475 MPLHVLTDHAVKTSGLLEMYQQEKGEKSKA-RIENLEELV-----------TATRQFEKP 522
                + D   +      +Y  E  E + A R  N+ E V             T   + P
Sbjct: 479 DSRTFMLDWLKEIDYEKHLYDGEDSESAAASRWTNVLEFVDWMSQRAGGTIDDTSGADNP 538

Query: 523 EEAQEMTMLTAFLTHAALEA-GEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFP 581
            E +  ++L    T + L    E Q D+  D V L TLH++KGLE+P V ++GV EG+ P
Sbjct: 539 IETERKSLLEVAQTISLLSTISERQQDQ--DVVTLSTLHASKGLEWPHVMLIGVSEGLLP 596

Query: 582 ----------SQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSR 631
                      ++S +   RL+EERRL YVG+TRA + L +++ + R+   +     PSR
Sbjct: 597 FKLDDDNGRQQKVSEDTLQRLQEERRLMYVGITRAQRSLAVSWTKKRKQGREMVPCVPSR 656

Query: 632 FIREL 636
           FI E+
Sbjct: 657 FIAEM 661