Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 810 a.a., UvrD-helicase domain-containing protein from Variovorax sp. OAS795

 Score =  636 bits (1640), Expect = 0.0
 Identities = 352/798 (44%), Positives = 490/798 (61%), Gaps = 87/798 (10%)

Query: 5   SLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFT 64
           S LL  LN +QR AV  P  N LILAGAGSGKTRVL  RIAWL+   + S   ++AVTFT
Sbjct: 21  SPLLANLNPEQRTAVTLPAGNALILAGAGSGKTRVLTTRIAWLLQTGQVSAGGILAVTFT 80

Query: 65  NKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL 124
           NKAA EM  R+  ++     GMW GTFHG+C+R+LRAH+  A L   FQI+D+ DQ   +
Sbjct: 81  NKAAKEMMTRLTAMLPVNVRGMWIGTFHGLCNRLLRAHWKLANLPSTFQILDTQDQLSAI 140

Query: 125 KRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRA 184
           KRL+K  N+DD+++PA+Q  W+I   K++GLRP  +       +  ++LY  Y+E C R 
Sbjct: 141 KRLMKQFNVDDERFPAKQTQWFIAGAKEDGLRPKDVEIRTEDDRKKVELYQLYEEQCQRE 200

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAG------ 238
           G+VDF E++LR+ ELLR N  +REHYQ RF+HIL+DEFQDTN +QYAW++M++G      
Sbjct: 201 GVVDFGELMLRSYELLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMLSGTTAAGQ 260

Query: 239 ---AQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNT 295
               Q++V+ VGDDDQSIY +RGARV N+  F REF   + I+LEQNYRS   IL+++N 
Sbjct: 261 FTPGQNSVIAVGDDDQSIYAFRGARVGNMADFVREFDVQHQIKLEQNYRSYSNILDSANE 320

Query: 296 LIANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYR 355
           LI++N +R+GK L TD   GEP+ VY +  +L EA+++V +++     G    + A+LYR
Sbjct: 321 LISHNKKRLGKNLRTDQGPGEPVRVYESPTDLAEAQWMVEEMRQLVRDGFDRKEMAVLYR 380

Query: 356 NNAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPP 415
           +NAQSRV+E AL  AS+ YR+YGG+RFFER EIK AL+YLRL+ N++DDT+F RV+N PP
Sbjct: 381 SNAQSRVIETALFNASVPYRVYGGLRFFERAEIKHALAYLRLLENKDDDTSFLRVVNFPP 440

Query: 416 RGLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDM 475
           RG+G +TLE ++ AAR  G +L DA         + G+A S L+ FV  I+ L E+    
Sbjct: 441 RGIGARTLEQLQDAARTAGRSLHDAV------HAVGGKAGSNLTAFVAKIDVLREQTQGA 494

Query: 476 PLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQF---------------- 519
            L  + +  +  SGL+E Y+ ++  +   RIENLEELV A   F                
Sbjct: 495 SLREIIELVLDHSGLVEHYKADR--EGADRIENLEELVNAAESFVTQEGFGRDAVALPID 552

Query: 520 ------------------EKP-----EEAQEMTMLTAFLTHAALEAGEGQADEHDDAVQL 556
                             ++P     E  + ++ L AFLTHAALE+G+ QA    DAVQL
Sbjct: 553 ELRQSLASQGIDPNRPLMDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQDAVQL 612

Query: 557 MTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYITYAE 616
           MT+H+AKGLEF  VF+ G+EEG+FP + S  +   LEEERRL YV +TRA ++LY+++++
Sbjct: 613 MTVHAAKGLEFDCVFITGMEEGLFPHENSMSDFESLEEERRLMYVAITRARKRLYLSHSQ 672

Query: 617 MRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTG------------------- 657
            R L+GQ +Y+  SRF  ELPEG L  +  K Q   P++ G                   
Sbjct: 673 TRMLHGQTRYNVKSRFFEELPEGALKWLTPKNQAFTPSAFGYGGGYASTRGGSGGYSGGS 732

Query: 658 ----------RFSQTVV--KESFNETGFNLGSRVRHPKFGEGTIINFEGSGPQSRVQVAF 705
                      ++   V  +++    G   G +V H KFGEGT+++ EG+G  +R QV F
Sbjct: 733 GSGGYGGSKDTYASPPVPPQKTAPSHGLRSGMQVFHNKFGEGTVLSLEGTGDDARAQVKF 792

Query: 706 NGEGIKWLVTAYARLEKV 723
           +  G+KWL  + A+L  V
Sbjct: 793 SRHGVKWLALSVAKLTPV 810