Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) from Sphingobium sp. HT1-2

 Score =  526 bits (1356), Expect = e-153
 Identities = 312/758 (41%), Positives = 438/758 (57%), Gaps = 59/758 (7%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           L GLN+ QREAV      +L+LAGAG+GKT  L  R+A L++ + A P  ++AVTFTNKA
Sbjct: 14  LKGLNEPQREAVLTTEGPVLVLAGAGTGKTAALTARLAHLVATQRAWPSEILAVTFTNKA 73

Query: 68  AAEMRGRIEELMHGTASGM-WCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKR 126
           A EMR R+  ++     GM W GTFH I  ++LR H     L  +F I+D+DDQ RL+K+
Sbjct: 74  AREMRERVGRMIGPAVEGMPWLGTFHAIAAKMLRRHAELVGLQSNFTILDTDDQLRLMKQ 133

Query: 127 LIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTY---LKLYTAYQEACDR 183
           LI+A  +D+K+WPARQ+A  I+  K++GL P  + A +     +    KLY AYQ     
Sbjct: 134 LIQAEGIDEKRWPARQLAGLIDQWKNKGLTPEEVGAGEAEGYAHGKGQKLYAAYQARLRE 193

Query: 184 AGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNV 243
               DF ++LL +L +L+ ++ + E YQ RFK+I+VDE+QDTN+ QY WLR++A  + N+
Sbjct: 194 VNACDFGDLLLHSLTILKRHRDVLEQYQQRFKYIMVDEYQDTNSSQYLWLRLLAQTRKNI 253

Query: 244 MIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSER 303
             VGDDDQSIY WRGA V NI +F ++FP    +RLEQNYRST  IL A++ +IA N  R
Sbjct: 254 CCVGDDDQSIYSWRGAEVANILRFEKDFPGAVIVRLEQNYRSTPHILGAASGVIAENGNR 313

Query: 304 MGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVL 363
           +GK LWTD  VGE + V   ++  +EAR V  +I+     GG+L + AIL R   Q+R  
Sbjct: 314 LGKTLWTDIDVGEKVRVLGVWDGPEEARRVGDEIEAIARAGGSLDEVAILVRAQHQTREF 373

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E+  +Q  L YRI GG RF+ER EI+DAL+YLRL+N   DD AFER++N P RGLGDK +
Sbjct: 374 EDRFIQIGLPYRIVGGFRFYERAEIRDALAYLRLVNQPADDLAFERIVNVPKRGLGDKAV 433

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDH 483
           E +   AR  G  L  A+  +L+   LT +A  +L  F+  +    +    +P   L   
Sbjct: 434 EKLHRLARAEGIPLALAAARILDTDELTPQARRSLGAFIGDLARWRDRAAQLPHAELARQ 493

Query: 484 AVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAG 543
            +  SG     Q E+  +S  R+ENL EL  A  ++E          L AFL H +L   
Sbjct: 494 ILDESGYTATLQAERSTESAGRLENLSELTRAMEEYE---------TLGAFLEHVSL-VM 543

Query: 544 EGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAG--RLEEERRLCYV 601
           + +A + +  + +MT+H+AKGLEF  VF+ G EEG+FPSQ + +E G   LEEERRL YV
Sbjct: 544 DNEAQQDEQKLTIMTIHAAKGLEFDNVFLAGWEEGIFPSQRALDEGGLNSLEEERRLAYV 603

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMK-------------- 647
            +TRA ++  I +A  RR+YGQ     PSRF+ ELP   +DE                  
Sbjct: 604 AITRARKRCTILHAANRRIYGQWTSSIPSRFVGELPPEHVDEESSMSGGASLWRANWSER 663

Query: 648 ----AQVSRPT----------STGRFSQTVVK--------ESFNETG---FNLGSRVRHP 682
               A V+R +          S+G+FS+  V+         S    G    ++G RV H 
Sbjct: 664 DDPFANVARGSSRGPGWQRAQSSGQFSREPVRIVEARTSAVSLGNKGRDDVSVGQRVFHQ 723

Query: 683 KFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAYARL 720
           KFG GTI   EG    +++++ F   G K ++ ++  L
Sbjct: 724 KFGYGTIAAIEG----NKLEIDFETAGRKRVMDSFVTL 757