Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 806 a.a., ATP-dependent DNA helicase UvrD/PcrA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  619 bits (1596), Expect = 0.0
 Identities = 348/803 (43%), Positives = 478/803 (59%), Gaps = 92/803 (11%)

Query: 5   SLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFT 64
           S LL GLN +Q  AV  P E+ LILAGAGSGKTRVL  RIAWL+   + SP  ++AVTFT
Sbjct: 12  SPLLAGLNAEQSAAVLLPAEHALILAGAGSGKTRVLTTRIAWLLQSGQVSPGGILAVTFT 71

Query: 65  NKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLL 124
           NKAA EM  R+  ++     GMW GTFHG+C+R LRAH+  A L   FQI+D+ DQ   +
Sbjct: 72  NKAAKEMMTRLSAMLPINVRGMWIGTFHGLCNRFLRAHHKLANLPATFQILDTQDQLSAI 131

Query: 125 KRLIKAHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAYQEACDRA 184
           KRL K  N+DD+++P +Q+ ++I+  K++G RP  + A D  T+  L+LY  Y+E C R 
Sbjct: 132 KRLCKQFNVDDERYPPKQIQYFISGCKEDGQRPHDVPARDEETRKKLELYALYEEQCQRE 191

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAG------ 238
           G+VDF E++LR+ E+LR N  +REHYQ RF+HIL+DEFQDTN +QYAW++M +       
Sbjct: 192 GVVDFGELMLRSYEVLRDNDPVREHYQRRFRHILIDEFQDTNRLQYAWIKMFSAPPLEGL 251

Query: 239 --AQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTL 296
             + + V  VGDDDQSIY +RGARV N+  F REF   + I+LEQNYRS   IL+++N L
Sbjct: 252 TPSGNAVFAVGDDDQSIYAFRGARVGNMADFVREFGVRHQIKLEQNYRSVSNILDSANQL 311

Query: 297 IANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRN 356
           I++N+ R+GK L TD   GEP+ V+ A ++  EA+++V ++K    +G   ++ A+LYR+
Sbjct: 312 ISHNTHRLGKNLRTDAGAGEPVRVFEATSDFAEAQWMVDEMKQLAREGIPRSEMAVLYRS 371

Query: 357 NAQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPR 416
           NAQSRV+E AL  A+L YR+YGG+RFFER EIK AL+YLRL+ N +DDT+F RV+N PPR
Sbjct: 372 NAQSRVVETALFNAALPYRVYGGLRFFERAEIKHALAYLRLLENAHDDTSFLRVVNFPPR 431

Query: 417 GLGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMP 476
           G+G +++E ++  AR  GC+L DA         +TGRA  A+  F   I+ + E+     
Sbjct: 432 GIGARSIEQLQDVARTSGCSLHDAV------SAVTGRAGVAVGNFAAKIDVMREQTEGRT 485

Query: 477 LHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQF----------------- 519
           L  + +  +  SGL+E Y+ E+  + + R+ENLEELV A   F                 
Sbjct: 486 LREIIELVLAHSGLIEHYRGER--EGQDRVENLEELVNAAESFVSIEGFGRDAVALPVDE 543

Query: 520 -EKP-------------------------EEAQEMTMLTAFLTHAALEAGEGQADEHDDA 553
             KP                         E  + ++ L AFLTHAALE+G+ QA    DA
Sbjct: 544 LGKPLTQSPVSQGLDPNLPVVDEPLAPDAETGETLSPLAAFLTHAALESGDNQAQAGQDA 603

Query: 554 VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYIT 613
           VQLMT+H+AKGLEF  VF+ G+EEG+FP + S  +   LEEERRL YV +TRA ++LY++
Sbjct: 604 VQLMTVHAAKGLEFDCVFITGMEEGLFPHENSMSDRDGLEEERRLMYVAITRARKRLYLS 663

Query: 614 YAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQV-SRPTSTG--------------- 657
           +++ R L+GQ +Y+  SRF  ELPE CL  +       S P   G               
Sbjct: 664 HSQTRMLHGQTRYNMKSRFFDELPEECLKWLTPPQPAWSAPMGGGGGQWQNGRRGFGGAP 723

Query: 658 RFSQTVVKESFNETG-----------------FNLGSRVRHPKFGEGTIINFEGSGPQSR 700
              Q      F E G                    G  V H KFGEG ++  EG+G  +R
Sbjct: 724 AALQPSWSPGFKERGDPKGLGQTAPEPDRGTEIRAGLAVFHNKFGEGKVLAVEGAGDDAR 783

Query: 701 VQVAFNGEGIKWLVTAYARLEKV 723
            QV F   G KWL  + A+L  +
Sbjct: 784 AQVNFTRHGTKWLALSVAKLTPI 806