Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 692 a.a., ATP-dependent DNA helicase Rep from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  350 bits (899), Expect = e-100
 Identities = 243/666 (36%), Positives = 350/666 (52%), Gaps = 36/666 (5%)

Query: 10  GLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAA 69
           GLN  Q EAV       L+LAGAGSGKTRV+ H+I  L+    A+   + A+TFTNKAAA
Sbjct: 4   GLNIAQLEAVNHLAGPCLVLAGAGSGKTRVITHKIGRLIQAGLAAD-RIAAITFTNKAAA 62

Query: 70  EMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           EMR R  +L+   A  +   TFH +  R+LR       L + F I+D+DD   +LK    
Sbjct: 63  EMRERAAQLVGRDARKVLICTFHALGVRLLRDDGEVLGLKKQFSILDTDDITSMLK---D 119

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGLV 187
                D    AR   W I+  K  G+        A D   +    +   Y+E       V
Sbjct: 120 CGGTTDTA-TARGWQWAISAWKGAGMNAAQCLAQAKDEDERVTATIMARYEERLVAYQSV 178

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++   L+LLR ++ +R  +Q +  H+LVDE+QDTNA QY  L+++ G +     VG
Sbjct: 179 DFDDLITLPLKLLREHEDVRARWQKKMGHVLVDEYQDTNATQYELLKLLVGERGRFTAVG 238

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIYGWRGA ++N++K  +++P +  I+LEQNYRST  IL A+N +I  N +   K 
Sbjct: 239 DDDQSIYGWRGATLDNLKKLPQDYPELKVIKLEQNYRSTSAILRAANNVIGPNPKLFPKT 298

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQ--EQGGTLTDCAILYRNNAQSRVLEE 365
           LW+D   GEP+ V  A NE  EA   V++I   +   Q     D AILYR N  +R  E+
Sbjct: 299 LWSDLGEGEPVRVVDADNEEHEAERAVARILSLRASSQHKEWRDFAILYRANHMARPFEQ 358

Query: 366 ALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLET 425
           +L +A + Y++ GG  FF++ EI+D  ++LRL+ N NDD AF R   TP RG+G  TL+ 
Sbjct: 359 SLRRAQVPYKVSGGQSFFDKAEIRDLCAWLRLLVNNNDDPAFLRSATTPKRGIGHTTLQQ 418

Query: 426 IRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEE-----GIDMPLHVL 480
           +   A     +L++A         L  RA + L  F   +N LE       G +     L
Sbjct: 419 LGAFATQYKLSLFEALFANSLGTALPPRAVATLHEFGRAVNDLEYRARHTLGHEAARAFL 478

Query: 481 TDHAVKTSGLLEMYQQEKGEK-SKARIENLEELV--TATRQFEKPEEAQ------EMTML 531
           T+          +Y  E  EK + AR  N+ +     A R   K EE        E   L
Sbjct: 479 TEWLKDIDYEKHLYDSEDNEKVAAARWTNVMDFCDWVAGRCGGKLEEEDGVKIETERKSL 538

Query: 532 TAFLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQM------- 584
              +   AL +   + ++  + V L TLH++KGLE+P V +VGV EG+ P +M       
Sbjct: 539 LEVVQTIALLSTLSEREQDQNVVTLSTLHASKGLEWPHVMLVGVNEGLLPFKMEEEPGQS 598

Query: 585 ---SAEEAGRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCL 641
              +A+ A RL+EERRL YVG+TRA + L +++ + R+   +      SRFI+E+    L
Sbjct: 599 DAQAADMAQRLQEERRLMYVGITRAQRTLAVSWLKRRKKGRESIPGLASRFIKEM---AL 655

Query: 642 DEVRMK 647
           D+  +K
Sbjct: 656 DQATVK 661