Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA helicase Rep from Pantoea agglomerans CFBP13505 P0401

 Score =  393 bits (1009), Expect = e-113
 Identities = 252/661 (38%), Positives = 371/661 (56%), Gaps = 23/661 (3%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q+ AV       L+LAGAGSGKTRV+ ++IA L+         + AVTFTNKA+ E
Sbjct: 3   LNPSQQRAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRECGYQARHIAAVTFTNKASRE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + +    A G+   TFH +   I++       +  +F + D  DQ  LLK L K
Sbjct: 63  MKERVAQTLGRKEARGLLISTFHTLGLEIIKRETAALGMKSNFSLFDDQDQLALLKELTK 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHINAFDPVTQT--YLKLYTAYQEACDRAGLV 187
               +DK    +Q+   I+N K++ + P    A     Q   +   Y  Y +      ++
Sbjct: 123 EWLEEDKTL-LQQLISTISNWKNDLIDPQGAAALARSQQDNIFAHCYALYSQHLKSCNVL 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L    LL+ NQ +RE +Q R +++LVDE+QDTN  QY  ++++ GA++   +VG
Sbjct: 182 DFDDLILLPTLLLQRNQEVRERWQQRIRYLLVDEYQDTNTSQYELVKLLVGARARFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGAR +N+    ++FP++  ++LEQNYRS++ IL+A+N LIANN     K+
Sbjct: 242 DDDQSIYSWRGARPQNLVLLNQDFPALEVVKLEQNYRSSQRILKAANILIANNPHVFEKR 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVLEEA 366
           L+++   G  + V +A +E  EA  V  ++        T   D AILYR N QSR  E+ 
Sbjct: 302 LFSELGQGSELKVLTANSEEHEAERVTGELIAHHFINRTQYKDYAILYRGNHQSRTFEKF 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L+Q  + YRI GG  FF R EIKD L+YLR++ N  DD+AF R++NTP R +G  TL+ +
Sbjct: 362 LMQNRIPYRISGGTSFFSRPEIKDLLAYLRVLTNPEDDSAFLRIVNTPRREIGPATLQKL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVK 486
              A  R  +L++AS  +   Q L+GR    L RF   +N + +     P++ + D    
Sbjct: 422 GEWANLRSKSLFNASFDVGLGQTLSGRGLEHLQRFTHWLNEIIQLTEREPVNAVRDLIRG 481

Query: 487 TSGLLEMYQQEKGEK-SKARIENLEELVT-ATRQFEKPEEAQEMTM---LTAFLTHAALE 541
                 +++     K ++ R++N+  L    T   E  +  + MT+   +T F     +E
Sbjct: 482 IDYESWLFETSGSPKAAEMRMKNVNTLFQWMTEMLEGSDIDEPMTLAQVVTRFTLRDMME 541

Query: 542 AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYV 601
            GE  +DE  D VQLMTLH++KGLEFP VF+VG+EEG+ P Q S +E   +EEERRL YV
Sbjct: 542 RGE--SDEELDQVQLMTLHASKGLEFPYVFLVGMEEGLLPHQSSIDE-NNIEEERRLAYV 598

Query: 602 GMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLD----------EVRMKAQVS 651
           G+TRA ++L  T    RR YG+    +PSRF+ ELP+  L           E RMK   S
Sbjct: 599 GITRAQKELTFTLCRERRQYGELIRPEPSRFLLELPQDDLQWETERKVVSAEERMKTGQS 658

Query: 652 R 652
           R
Sbjct: 659 R 659