Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 674 a.a., ATP-dependent DNA helicase Rep from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  400 bits (1027), Expect = e-115
 Identities = 251/640 (39%), Positives = 369/640 (57%), Gaps = 19/640 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q+ AV       L+LAGAGSGKTRV+ ++IA L+         + AVTFTNKAA E
Sbjct: 3   LNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 71  MRGRI-EELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + L    A G+   TFH +   I++  Y    +  +F + D  DQ  LLK L +
Sbjct: 63  MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKSNFSLFDDTDQVALLKELTE 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHINAF-----DPVTQTYLKLYTAYQEACDRA 184
               DDK    +Q+   I+N K++   P    A      D +      LY A+ +AC+  
Sbjct: 123 GLIEDDKVL-LQQLISTISNWKNDLKTPAQAAAGAKGERDRIFAHCYGLYDAHMKACN-- 179

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
            ++DF +++L    LL+ N  +RE +Q + +++LVDE+QDTN  QY  ++++ G ++   
Sbjct: 180 -VLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQDTNTSQYELVKLLVGQRARFT 238

Query: 245 IVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERM 304
           +VGDDDQSIY WRGAR +N+   +++FP++  I+LEQNYRS+  IL+A+N LIANN    
Sbjct: 239 VVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQNYRSSGRILKAANILIANNPHVF 298

Query: 305 GKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVL 363
            K+L+++   G  + V SA NE  EA  V  ++        T   D AILYR N QSRV 
Sbjct: 299 EKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVF 358

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E+ L+Q  + Y+I GG  FF R EIKD L+YLR++ N +DD+AF R++NTP R +G  TL
Sbjct: 359 EKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATL 418

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTD- 482
           + +   A  R  +L+ AS  +   Q LTGR   +L+RF   +  ++      P+  + D 
Sbjct: 419 QKLGEWAMTRNKSLFTASFDMGLSQKLTGRGYDSLTRFTHWLGEIQRLAEREPVAAVRDL 478

Query: 483 -HAVKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL 540
            H +     L  Y+     K ++ R++N+ +L +   +  +  E  E   LT  +T   L
Sbjct: 479 IHGIDYESWL--YETSPSPKAAEMRMKNVNQLFSWMTEMLEGNELDEPMTLTQVVTRFTL 536

Query: 541 E--AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRL 598
                 G+++E  D VQLMTLH++KGLEFP V+MVG+EEG  P Q S +E   +EEERRL
Sbjct: 537 RDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDE-DNIEEERRL 595

Query: 599 CYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
            YVG+TRA ++L  T  + RR YG+    +PSRF+ ELP+
Sbjct: 596 AYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQ 635