Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA helicase and single-stranded DNA-dependent ATPase (NCBI) from Escherichia coli BW25113

 Score =  397 bits (1021), Expect = e-115
 Identities = 248/640 (38%), Positives = 373/640 (58%), Gaps = 19/640 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q++AV       L+LAGAGSGKTRV+ ++IA L+         + AVTFTNKAA E
Sbjct: 3   LNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAARE 62

Query: 71  MRGRI-EELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + L    A G+   TFH +   I++  Y    +  +F + D  DQ  LLK L +
Sbjct: 63  MKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKANFSLFDDTDQLALLKELTE 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTH-----INAFDPVTQTYLKLYTAYQEACDRA 184
               DDK    +Q+   I+N K++   P+      I   D +      LY A+ +AC+  
Sbjct: 123 GLIEDDKVL-LQQLISTISNWKNDLKTPSQAAASAIGERDRIFAHCYGLYDAHLKACN-- 179

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
            ++DF +++L    LL+ N+ +R+ +Q + +++LVDE+QDTN  QY  ++++ G+++   
Sbjct: 180 -VLDFDDLILLPTLLLQRNEEVRKRWQNKIRYLLVDEYQDTNTSQYELVKLLVGSRARFT 238

Query: 245 IVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERM 304
           +VGDDDQSIY WRGAR +N+   +++FP++  I+LEQNYRS+  IL+A+N LIANN    
Sbjct: 239 VVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQNYRSSGRILKAANILIANNPHVF 298

Query: 305 GKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVL 363
            K+L+++   G  + V SA NE  EA  V  ++        T   D AILYR N QSRV 
Sbjct: 299 EKRLFSELGYGAELKVLSANNEEHEAERVTGELIAHHFVNKTQYKDYAILYRGNHQSRVF 358

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E+ L+Q  + Y+I GG  FF R EIKD L+YLR++ N +DD+AF R++NTP R +G  TL
Sbjct: 359 EKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRVLTNPDDDSAFLRIVNTPKREIGPATL 418

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTD- 482
           + +   A  R  +++ AS  +   Q L+GR   AL+RF   +  ++      P+  + D 
Sbjct: 419 KKLGEWAMTRNKSMFTASFDMGLSQTLSGRGYEALTRFTHWLAEIQRLAEREPIAAVRDL 478

Query: 483 -HAVKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAAL 540
            H +     L  Y+     K ++ R++N+ +L +   +  +  E  E   LT  +T   L
Sbjct: 479 IHGMDYESWL--YETSPSPKAAEMRMKNVNQLFSWMTEMLEGSELDEPMTLTQVVTRFTL 536

Query: 541 E--AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRL 598
                 G+++E  D VQLMTLH++KGLEFP V+MVG+EEG  P Q S +E   ++EERRL
Sbjct: 537 RDMMERGESEEELDQVQLMTLHASKGLEFPYVYMVGMEEGFLPHQSSIDE-DNIDEERRL 595

Query: 599 CYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
            YVG+TRA ++L  T  + RR YG+    +PSRF+ ELP+
Sbjct: 596 AYVGITRAQKELTFTLCKERRQYGELVRPEPSRFLLELPQ 635