Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 688 a.a., ATP-dependent DNA helicase Rep (EC 3.6.1.-) from Kangiella aquimarina DSM 16071

 Score =  389 bits (998), Expect = e-112
 Identities = 250/653 (38%), Positives = 365/653 (55%), Gaps = 23/653 (3%)

Query: 5   SLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFT 64
           +L L  LN+KQREA+ A    LL+LAGAGSGKT V+  ++ +L+  ++    +++AVTFT
Sbjct: 14  ALSLPQLNEKQREALLATQGPLLVLAGAGSGKTSVITRKMVYLIKEKQIPARNIVAVTFT 73

Query: 65  NKAAAEMRGRIEELMHGTAS-GMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRL 123
           NKAA EM+ R+ +L    A+ G+   TFH      +R  Y    +  +F I D  D   L
Sbjct: 74  NKAAREMKQRVSKLAGSNATQGLTVSTFHNFGLNFIRREYKKLGMKSNFTIFDDQDTLAL 133

Query: 124 LKRLIKAHNLDDKQWPAR---QVAWWINNQKDEGLRPTHINAFDPVTQT-YLKLYTAYQE 179
           LK L       DKQ   R   Q++ W N   D  L    IN      Q  + K+Y  Y  
Sbjct: 134 LKDLGFKEAESDKQLLFRLQQQISAWKN---DLILPEQAINQVKDQEQLIFSKVYEKYAR 190

Query: 180 ACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGA 239
           +      VDF +++L    LLR +  +RE +Q + +++LVDE+QDTN  QY  ++ + G 
Sbjct: 191 SMKAYNAVDFDDLILIPTLLLRDDPEVREKWQNKIRYLLVDEYQDTNTSQYELIKHLVGQ 250

Query: 240 QSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIAN 299
             +  +VGDDDQSIY WRGAR EN+++  +++P++  I+LEQNYRS   IL+A+N LI N
Sbjct: 251 FGSFTVVGDDDQSIYSWRGARPENLDQLAKDYPNLQVIKLEQNYRSYGRILKAANVLIDN 310

Query: 300 NSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKI--KGWQEQGGTLTDCAILYRNN 357
           N     K+LW+D   G+P+ V +  NE  EA  VV++I  +  + + G  +D AILYR N
Sbjct: 311 NPHVFEKKLWSDKPYGDPLKVVTCPNEDAEAEKVVTEIISRKVRTKNGRYSDFAILYRGN 370

Query: 358 AQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRG 417
            Q+++ E  L+  ++ Y+I G   FF R EIKD ++YLRL+ N +DD AF R+ NTP RG
Sbjct: 371 HQAKIFERTLIANNVPYKISGSTSFFSRAEIKDIMAYLRLLTNPDDDNAFLRIANTPRRG 430

Query: 418 LGDKTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELI-----NALEEEG 472
           +G  TLE +   A  R  +L+ A+  +  +Q L G+    + RF +LI     NA   + 
Sbjct: 431 IGPTTLEQLGSYANMRHISLFAATQEIGLEQHLQGKGLENIRRFADLISRAADNAERGDS 490

Query: 473 IDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLT 532
           + + +H L       S L E     K   ++ R  N++EL+    +     E        
Sbjct: 491 VGV-IHDLVARIGYHSWLHETSSTPKA--AEYRWNNIQELLGWVEKGIDDNEHDPNPFAA 547

Query: 533 A---FLTHAALEAGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEA 589
           A    +    L+  E + +E ++ VQLMTLH+AKGLEF  V++VG+EE   P + S E  
Sbjct: 548 AVANLMLRDMLDRNEKEEEESNE-VQLMTLHAAKGLEFNHVYLVGMEEEFLPHKSSIEN- 605

Query: 590 GRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLD 642
             +EEERRL YVG+TRA Q L  T  + R  YG+    +PSRF+ ELP+  LD
Sbjct: 606 DDIEEERRLAYVGITRAQQTLTFTLCKKRSKYGEVMACEPSRFLEELPQDDLD 658