Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 676 a.a., DNA helicase Rep from Erwinia tracheiphila SCR3

 Score =  392 bits (1007), Expect = e-113
 Identities = 242/638 (37%), Positives = 361/638 (56%), Gaps = 15/638 (2%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN  Q+ AV       L+LAGAGSGKTRV+ ++IA+L+         + AVTFTNKA+ E
Sbjct: 3   LNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAYLIRECGYQARHIAAVTFTNKASRE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + +    A G+   TFH +   I++  Y    +  +F + D  DQ  LLK L +
Sbjct: 63  MKERVAQTLGRKEARGLMISTFHTLGLEIVKKEYAALGMKSNFSLFDDQDQLALLKELTE 122

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHINAF-----DPVTQTYLKLYTAYQEACDRA 184
               +DK    +Q+   I N K++ + P+   A      D +      LY  + ++C+  
Sbjct: 123 PWLENDKNL-LQQLISTIGNWKNDLMDPSRAAASVSSERDKIFAHCYGLYDRHLKSCN-- 179

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
            ++DF +++L    L + N+  RE +Q   +++LVDE+QDTN  QY  ++++ G ++   
Sbjct: 180 -VLDFDDLILLPTLLFQRNEEARERWQQCIRYLLVDEYQDTNTSQYELVKLLVGTRARFT 238

Query: 245 IVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERM 304
           +VGDDDQSIY WRGAR +N+     +FP++  I+LEQNYRS++ IL+A+N LIANN    
Sbjct: 239 VVGDDDQSIYSWRGARPQNLVLLKEDFPALQVIKLEQNYRSSERILKAANILIANNPHVF 298

Query: 305 GKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVL 363
            K+L++    G  + V +A +E  EA  V  ++        T   D AILYR N QSRV 
Sbjct: 299 EKRLFSTLGYGAELKVVTANHEEHEAGRVTGELIAHHFINKTQYKDYAILYRGNHQSRVF 358

Query: 364 EEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTL 423
           E+ L+Q  + YRI GG  FF R EIKD L+YLR++ N NDD+AF R++NTP R +G  TL
Sbjct: 359 EKMLMQNRIPYRISGGSSFFSRPEIKDLLAYLRVLTNENDDSAFMRIVNTPKREIGPATL 418

Query: 424 ETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDH 483
           + +   AR R  +L+ AS      Q LTGR   +L RF   +  +       P++ + D 
Sbjct: 419 QKLGEWARQRNNSLFSASFDFGLQQTLTGRGLESLQRFTGWLREIAALAEREPVNAVRDL 478

Query: 484 AVKTSGLLEMYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE- 541
                    +++     K ++ R++N+  L     +  +  +  E   LT  +T   L  
Sbjct: 479 ICGIDYESWLFETSTSPKAAEMRMKNVNTLFQWMTEMLEGSDIDEPMTLTQVVTRFTLRD 538

Query: 542 -AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCY 600
               G++DE  D VQLMTLH++KGLEFP V++VG+EEG+ P Q S +E   +EEERRL Y
Sbjct: 539 MMERGESDEDADQVQLMTLHASKGLEFPYVYLVGMEEGLLPHQSSIDE-NNVEEERRLAY 597

Query: 601 VGMTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPE 638
           VG+TRA ++L  T    RR YG+    +PSRF+ ELP+
Sbjct: 598 VGITRAQKELTFTLCRERRQYGELVRPEPSRFLLELPQ 635