Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 593 a.a., Superfamily I DNA and RNA helicases from Enterobacter asburiae PDN3

 Score =  121 bits (304), Expect = 9e-32
 Identities = 97/289 (33%), Positives = 149/289 (51%), Gaps = 24/289 (8%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN +Q  AV  P  ++ ++A  GSGKTR L ++IA+ +S        V+A+T+T++AA E
Sbjct: 9   LNPEQAAAVIEP-SSIFLIACPGSGKTRTLTYKIAYELS-RRTDKRIVVAITYTHRAADE 66

Query: 71  MRGRIEELMHGTASGMWCGTFHGICHRILRAHY--LDAKLLEDFQIIDSDDQQRLLKRLI 128
           ++ RIE+L   T SG+W GT H  C   +   Y      L + +++ID  D++ LL+RL 
Sbjct: 67  IQERIEDLGVDT-SGLWIGTIHAFCLEWILKPYGIYSPALAQGYRVIDPHDREHLLERLC 125

Query: 129 KAHNLDDKQWPARQVAWWINNQ--KDEGLRPTHIN-AFDPVTQTYLKLYTAYQEACDRAG 185
                     P + V  W  +    + G +   ++    P+    LKLY   + A +R  
Sbjct: 126 A---------PYKGVTHWDCDYYVTETGYKLGCVDMGKHPIIHKVLKLYFD-ELAANRQ- 174

Query: 186 LVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGA---QSN 242
            +DF  IL  A  L+R    I       F HILVDE+QDT  IQY  +  +  A   Q  
Sbjct: 175 -IDFELILWYAYSLMRDRSQIAVLLSRVFSHILVDEYQDTKQIQYTIVTSILRAGNGQIK 233

Query: 243 VMIVGDDDQSIYGWRGARVENIEKF-TREFPSVNTIRLEQNYRSTKTIL 290
           ++IVGD +Q+IYG  G     +++F T    S+  + L  NYRS++ I+
Sbjct: 234 ILIVGDPNQAIYGSLGGYAMPVDEFRTLAGISIKELALSLNYRSSERII 282



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 554 VQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVGMTRAMQKLYI 612
           + + T+H  KG EF +V   G+ EGM P      EA       +L YV  +RA + L++
Sbjct: 508 ITVSTIHGVKGAEFDVVIAFGLLEGMVP---HFNEANGSAAASKLLYVLSSRARKNLHL 563