Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 781 a.a., ATP-dependent DNA helicase PcrA from Azospirillum sp. SherDot2

 Score =  502 bits (1293), Expect = e-146
 Identities = 291/755 (38%), Positives = 419/755 (55%), Gaps = 59/755 (7%)

Query: 8   LDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKA 67
           LDGLN  QR AV A    +L+LAGAG+GKTRVL  R+A L+    A+ F ++AVTFTNKA
Sbjct: 33  LDGLNPTQRAAVEALDGPVLVLAGAGTGKTRVLTTRLAHLLMTRRAAAFQILAVTFTNKA 92

Query: 68  AAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRL 127
           A EMR R+  LM     G W GTFH +  RILR H     L  +F I+D+DDQ RL+K+L
Sbjct: 93  AREMRERVGHLMGIEPEGWWLGTFHALAARILRRHAELVGLKSNFTILDTDDQVRLIKQL 152

Query: 128 IKAHNLDDKQWPARQVAWWINNQKDEGLRPTHI---NAFDPVTQTYLKLYTAYQEACDRA 184
           ++A N+D K+WP RQV   I   KD GL P  +   +  D      + +Y AYQE     
Sbjct: 153 LQAENIDSKKWPPRQVLGAIERWKDRGLTPDRLGDADGGDVAGGRVVAIYRAYQERLRTL 212

Query: 185 GLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVM 244
              DF ++LL  L + + +  +   Y  +FK++LVDE+QDTN  QY WLR+++ A  N+ 
Sbjct: 213 NACDFGDLLLHNLAIFQNHPDVLAEYHRKFKYLLVDEYQDTNVAQYLWLRILSQAHKNIC 272

Query: 245 IVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERM 304
            VGD+DQSIY WRGA + NI +F  +FP    ++LEQNYRST  IL A++ LIANN  R+
Sbjct: 273 CVGDEDQSIYAWRGAEIGNILRFETDFPGATIVKLEQNYRSTGHILAAASGLIANNQGRL 332

Query: 305 GKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLE 364
           GK LWT+   GE + V + ++  +EAR+V  +I+  Q +G +L   A+L R   Q+R  E
Sbjct: 333 GKTLWTEADGGERVKVKAVWDGEEEARWVGEEIETLQRKGTSLAQIAVLVRAGFQTREFE 392

Query: 365 EALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLE 424
           E  +   L Y++ GG RF+ERQEI+DAL+Y R++N+ +DD AFER++N P RG+G   ++
Sbjct: 393 ERFITLGLPYKVLGGPRFYERQEIRDALAYFRVVNSGDDDLAFERIVNLPKRGVGPAAMQ 452

Query: 425 TIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHA 484
           ++  AAR RG +L +A   L     L  +  + L   ++           +P   L    
Sbjct: 453 SLYTAARARGLSLTEAGWALTETDELKPKLRATLRGLLQDFFRWRTLMATVPHTELARTV 512

Query: 485 VKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGE 544
           +  SG   M+Q++K  ++  R+ENL+EL+TA  +FE          L  FL H AL    
Sbjct: 513 LDESGYTRMWQEDKTPEAPGRLENLKELITAMAEFEN---------LPGFLEHVALVMEN 563

Query: 545 GQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAG--RLEEERRLCYVG 602
            +A    + V +MTLH AKGLEF  VF+ G EEG+FP+Q + +E G   LEEERRL YVG
Sbjct: 564 AEA-AGIEQVTVMTLHGAKGLEFDHVFLPGWEEGVFPNQRALDETGIAGLEEERRLAYVG 622

Query: 603 MTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGRF--- 659
           +TRA ++ Y+++A  RRLYG      PSRF+ E+P+  ++        +     G F   
Sbjct: 623 LTRARRRAYVSHAANRRLYGNWVSAVPSRFVEEIPQDNVEAEAANGLFAGSGGRGGFAGG 682

Query: 660 -------------------------------------SQTVVKESFNETGFNLGSRVRHP 682
                                                +  V      +  F  G+RV H 
Sbjct: 683 AGAYGAGGSAGGFGGGFQFRGSTRQAPAPKTITLDQGAYAVAPRPRPDAPFAKGARVFHQ 742

Query: 683 KFGEGTIINFEGSGPQSRVQVAFNGEGIKWLVTAY 717
           KFG GT++       + ++++ F+  G K ++ ++
Sbjct: 743 KFGYGTVVGVS----EDKLEIDFDHSGSKKVMDSF 773