Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., ATP-dependent DNA helicase rep from Alteromonas macleodii MIT1002

 Score =  383 bits (983), Expect = e-110
 Identities = 239/656 (36%), Positives = 367/656 (55%), Gaps = 13/656 (1%)

Query: 11  LNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAE 70
           LN+ Q  AV       L+LAGAGSGKTRV+ ++IA L+   +     + AVTFTNKAA E
Sbjct: 3   LNEAQESAVTFVSGPCLVLAGAGSGKTRVITNKIAHLVRNCDMPARYIAAVTFTNKAARE 62

Query: 71  MRGRIEELM-HGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRLLKRLIK 129
           M+ R+ + +    A G+   TFH +   I++AH  D  L   F + D  D   LL  L  
Sbjct: 63  MKERVAQTLGKPEARGLKVSTFHTMGLTIIKAHVKDLGLKPGFSLFDDKDSFALLNDLT- 121

Query: 130 AHNLDDKQWPARQVAWWINNQKDEGLRPTHI--NAFDPVTQTYLKLYTAYQEACDRAGLV 187
           +  LD  +   + +   I+N K++ + P  +  +A     + + + Y  YQ+       +
Sbjct: 122 SDTLDGDKDQLQLLQSCISNWKNDLILPDALLKSATSTGEREFAEAYKRYQDNLKAYNAL 181

Query: 188 DFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMAGAQSNVMIVG 247
           DF +++L    LL+ ++ IR  +Q++ +++LVDE+QDTN  QY  ++++ G ++   +VG
Sbjct: 182 DFDDLILLPTLLLKSSEAIRAKWQSKIRYLLVDEYQDTNTSQYELVKLLVGERARFTVVG 241

Query: 248 DDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLIANNSERMGKQ 307
           DDDQSIY WRGA+ +N+    ++FP +N I+L+QNYRS+  IL  +N LI NN     K 
Sbjct: 242 DDDQSIYSWRGAKPQNLHLLQQDFPRLNVIKLQQNYRSSGRILHCANILIQNNPHLFDKT 301

Query: 308 LWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGT-LTDCAILYRNNAQSRVLEEA 366
           L+++   GEP+ V  A NE  E   VV+++   +    T   D AILYR N QSR+ E+ 
Sbjct: 302 LFSELQYGEPLKVIEAKNEEHEGERVVAELLAHKFMNRTQFKDYAILYRGNHQSRIFEKL 361

Query: 367 LLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRGLGDKTLETI 426
           L+   + Y+I GGM FF R E+KD ++YLRL+ N++DD A  R+INTP RG+G  TLE +
Sbjct: 362 LMSNRIPYKISGGMSFFGRAEVKDIMAYLRLLVNQDDDNALLRIINTPGRGIGRATLEKL 421

Query: 427 RFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEGIDMPLHVLTDHAVK 486
              A   G ++++A+     + VL  +A  ++S F   I  L +              ++
Sbjct: 422 GNFANSLGVSMFEAATHPNLNSVLPDKAFHSVSTFARWIVELSDNAERGNTADAVRTMIR 481

Query: 487 TSGLLE-MYQQEKGEK-SKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALE--A 542
           T G  E +Y+     K ++  + N+  L        +  +  +   LT  +    L    
Sbjct: 482 TMGYEEWLYETSASPKAAEMAMANVSTLFGWVNDMLEGNDLDQPMTLTEVVNRLILRDMM 541

Query: 543 GEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEAGRLEEERRLCYVG 602
             G+ D   D VQLMTLH++KGLEFP+VF+VG+EEG+ P Q S +E   +EEERRL YVG
Sbjct: 542 ERGEDDGEGDQVQLMTLHASKGLEFPIVFLVGMEEGLLPHQSSVDE-DNVEEERRLAYVG 600

Query: 603 MTRAMQKLYITYAEMRRLYGQDKYHKPSRFIRELPEGCLDEVRMKAQVSRPTSTGR 658
           +TRA ++L  + A+ RR +G+    +PSRF+ ELP    D+V+ + Q  + T   R
Sbjct: 601 ITRAQRELIFSLAKERRQFGEVINPEPSRFLFELP---ADDVQWENQKPKATKEER 653