Pairwise Alignments

Query, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

Subject, 659 a.a., ATP-dependent DNA helicase PcrA from Acinetobacter radioresistens SK82

 Score =  248 bits (632), Expect = 9e-70
 Identities = 206/692 (29%), Positives = 325/692 (46%), Gaps = 62/692 (8%)

Query: 5   SLLLDGLNDKQREAVAAPLENLLILAGAGSGKTRVLVHRIAWLMSVEEASPFS-VMAVTF 63
           S L D LN KQ++A     +N L+LAGAG GKT+ +V R A+L  +++  P   +  +TF
Sbjct: 4   STLSDELNLKQKQAATTTAQNCLVLAGAGCGKTKTIVARAAYL--IDQGIPADQIQILTF 61

Query: 64  TNKAAAEMRGRIEELMHGTASGMWCGTFHGICHRILRAHYLDAKLLEDFQIIDSDDQQRL 123
           T +AA+E+  R+E+ +   A G+   TFH  C  +LR +   A  L  F IID DDQ  L
Sbjct: 62  TRRAASEIVTRVEQHLGAKARGLRASTFHTFCMYLLRRNS-QAFGLGQFSIIDRDDQI-L 119

Query: 124 LKRLIKAHNLDDKQWPARQV------AWWINNQKDEGLRPTHINAFDPVTQTYLKLYTAY 177
           + RL++  + +     A Q+      A    N+  E +     +A +   Q   +L  AY
Sbjct: 120 MFRLLRGKDKESVLPKAAQLCDIYSYARNTRNKLSEAIAQQWPDALEHKAQI-AELMQAY 178

Query: 178 QEACDRAGLVDFAEILLRALELLRGNQHIREHYQARFKHILVDEFQDTNAIQYAWLRMMA 237
           +        +D+ +IL      L+ ++ +          +LVDE QDTN +Q+A L+ + 
Sbjct: 179 ERRKRERNFLDYDDILAIVAVHLQHSEALVNWVTRLCSVLLVDEMQDTNPLQWALLQPLV 238

Query: 238 GAQSNVMIVGDDDQSIYGWRGARVENIEKFTREFPSVNTIRLEQNYRSTKTILEASNTLI 297
           G +  +  VGDD QSIYG+RGA  ENI  F    P    + L+ NYRST+ IL+ SN L+
Sbjct: 239 G-KIKLFCVGDDAQSIYGFRGADFENIHHFKERVPDAEVLNLDFNYRSTQEILDLSNWLL 297

Query: 298 ANNSERMGKQLWTDGLVGEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNN 357
             +     K L      G    ++   NE +EA ++   +   Q  G    +  IL R++
Sbjct: 298 DKSPLHYDKHLIAARGRGIKPQLHLFSNEFEEANWIAQDLIKRQYTGAQWYEHMILVRSS 357

Query: 358 AQSRVLEEALLQASLAYRIYGGMRFFERQEIKDALSYLRLINNRNDDTAFERVINTPPRG 417
             +R LE AL+ A++ Y+  GG++  E   +KD LS LR++ N  DD A+ R + T   G
Sbjct: 358 FTARHLEGALINANIPYKFVGGVKLLESAHVKDMLSMLRVVANPQDDIAWMRFL-TLWNG 416

Query: 418 LGD-----KTLETIRFAARDRGCTLWDASVGLLNDQVLTGRAASALSRFVELINALEEEG 472
           +GD        E I+ +  D  C   +    +    +L  +    L   VE+  +L  E 
Sbjct: 417 VGDVGASKLAHELIQLSDIDMRCERLEQHGRVALKAILMMKQLDVLQHEVEVCISLAVEA 476

Query: 473 IDMPLHVLTDHAVKTSGLLEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLT 532
           +   L              + Y+ ++  +     + +++L            A++   L 
Sbjct: 477 LSEQLE-------------DNYKNKEWSRRLKDFDLVKQL------------ARKHNSLA 511

Query: 533 AFLTHAALE---AGEGQADEHDDAVQLMTLHSAKGLEFPLVFMVGVEEGMFPSQMSAEEA 589
            FL    LE     E +     D V L+T+HSAKG E  + ++  V    +P   +  + 
Sbjct: 512 GFLEEYVLEPISVSEVERSTDQDLVTLITIHSAKGAEQKVCYVPHVSPSQYPHARAQGDF 571

Query: 590 GRLEEERRLCYVGMTRAMQKLYITYAEMRRLYGQDKYHKPSR-----FIRELPEGCLDEV 644
            ++EEERR+ YV +TRA  +L +T  E    + QDKY +  R     F+ +LPE  +D  
Sbjct: 572 DQVEEERRVLYVALTRAQDELILTKQEFSS-WAQDKYDEQGRIIESYFLNDLPESLVD-- 628

Query: 645 RMKAQVSRPTSTGRFSQTVVKESFNETGFNLG 676
               Q+ +P+S       V K   N    NLG
Sbjct: 629 ---VQIHQPSS----RSFVQKRWNNSAAINLG 653