Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., Ribosomal RNA large subunit methyltransferase J from Xanthobacter sp. DMC5

 Score =  186 bits (472), Expect = 5e-52
 Identities = 107/287 (37%), Positives = 169/287 (58%), Gaps = 13/287 (4%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH+FHAGN ADV+KH   + +L  L +K+ P+   DTH+G G YDL    + KTGE 
Sbjct: 1   MNYRHAFHAGNPADVMKHAALARVLAYLGKKDAPYRVLDTHAGAGLYDLDGINARKTGEA 60

Query: 62  KQGI-ARIWQQD--NIPAE----LDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRM 114
             GI A +  QD   +PA     L  YLD +R L +G   + YPGSP +A A  R QD+ 
Sbjct: 61  DAGIEAVLAAQDAGTLPAAAATLLAPYLDCVRGLREGGR-KLYPGSPALALALSRPQDKF 119

Query: 115 VLTELHPSDYPLLEQEFHR----DRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELA 170
           +  EL+  +   LE+        + +V +  +DG+  + A LPP+ERRG+VL+DPP+E  
Sbjct: 120 LFCELNKEERAKLEKRVGEAPGAEGRVKVLAQDGWQAIAAHLPPRERRGVVLVDPPFEEP 179

Query: 171 KEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDT 230
            E++ +V  +  +++R+ATGI+ +WYP+ +   +D     +  L++ K L++EL  A   
Sbjct: 180 DEFQRMVAGLEAAHRRFATGIFMLWYPIKDLRAVDAFRRDVAHLKLPKTLRVELDFAQVR 239

Query: 231 NERGMTASGMIVINPPWTLESQMQTILPFLKQAIA-PATGHYKVEWV 276
               ++ SG+I++NPP+TL  +M+T+L  L   +A    G  +V W+
Sbjct: 240 ALDTLSGSGLIIVNPPFTLADEMKTVLNALAPLLARDGKGRARVSWL 286