Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 321 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) from Variovorax sp. SCN45

 Score =  175 bits (443), Expect = 1e-48
 Identities = 107/307 (34%), Positives = 152/307 (49%), Gaps = 43/307 (14%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           M SYRH+FHAGNHADVLKH V    L+ L +K+      DTH+G G Y L  +++  +GE
Sbjct: 1   MFSYRHAFHAGNHADVLKHTVLIATLDHLLEKDAALTVVDTHAGAGLYRLDGDYAGTSGE 60

Query: 61  YKQGIARIWQQDNIPAELDS---------------------------YLDAIRQLNQGET 93
             +GI R+      PA   S                           YL  I   N    
Sbjct: 61  AAEGILRLLSGKKEPAAPASAPAPAAKSAAKKAAPEAEAPLADAIARYLGVISDFNSKGG 120

Query: 94  LRYYPGSPRVARAHLREQDRMVLTELHPSDYPLLEQ---EFHRDRQVSIYKEDGFARLKA 150
            R YPGSP + +  LR+ D++ L ELHP+D   L     +    RQ+++  EDGF     
Sbjct: 121 ARVYPGSPFIIQHLLRDHDKLKLFELHPTDSRTLSANIAQLEAGRQIAVLLEDGFGSATK 180

Query: 151 SLPPQERRGLVLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEG 210
            LPP  RR LVL+DP YE+  +Y  V+   A++ KR+ATG YAIWYP++ R +  D+   
Sbjct: 181 FLPPPSRRALVLMDPSYEMKTDYGRVLDFAAEALKRFATGTYAIWYPIIPRPEAHDLPRR 240

Query: 211 LQ-------------GLEIRKILQIELGVAPDTNERGMTASGMIVINPPWTLESQMQTIL 257
           L+              L ++     +   + +T   G+ ASGM +INPP+TL+  +   L
Sbjct: 241 LKTMATKAGKSWLHATLTVKSSKITKDAASGETQRPGLPASGMFLINPPYTLKPLLAEAL 300

Query: 258 PFLKQAI 264
           P L + +
Sbjct: 301 PQLVERL 307