Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Variovorax sp. OAS795

 Score =  183 bits (464), Expect = 5e-51
 Identities = 108/307 (35%), Positives = 157/307 (51%), Gaps = 45/307 (14%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           M SYRH+FHAGNHADVLKH V    L+ L +KE      DTH+G G Y L  +++  +GE
Sbjct: 1   MFSYRHAFHAGNHADVLKHTVLIATLDHLLEKEAALTVVDTHAGAGLYRLDGDYAGTSGE 60

Query: 61  YKQGIARIWQQDN------------------------IPAELDSYLDAIRQLNQGETLRY 96
             +G+ R+   +                         +   +  YL  I   N     R 
Sbjct: 61  AAEGVLRLLSDEKKAPAAPAPAAKTASKKAAPEAEAPLADAIARYLSVIHDFNPKGGARI 120

Query: 97  YPGSPRVARAHLREQDRMVLTELHPSDYPLLEQ---EFHRDRQVSIYKEDGFARLKASLP 153
           YPGSP + +  LR+ D++ L ELHP+D   L+    +    RQ+++ +EDGF      LP
Sbjct: 121 YPGSPFIVQHLLRDHDKLKLFELHPTDARTLDANIAQLEAGRQIAVLREDGFGSATKFLP 180

Query: 154 PQERRGLVLIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQG 213
           P  RR LVL+DP YE+  +Y  V+   A++ KR+ATG YAIWYP++ R +  D+   L+ 
Sbjct: 181 PPSRRALVLMDPSYEIKSDYGRVLDFAAEALKRFATGTYAIWYPIIPRPEAHDLPRRLKT 240

Query: 214 LEIR---------------KILQIELGVAPDTNERGMTASGMIVINPPWTLESQMQTILP 258
           L  +               K++  E G   +T   G+ ASGM +INPP+TL+  +   LP
Sbjct: 241 LATKAGKPWLHATLTVKSSKLITKESG---ETQRPGLPASGMFLINPPYTLKPLLAAALP 297

Query: 259 FLKQAIA 265
            L + +A
Sbjct: 298 QLVERLA 304