Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 305 a.a., Protein involved in catabolism of external DNA from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  187 bits (476), Expect = 2e-52
 Identities = 113/287 (39%), Positives = 150/287 (52%), Gaps = 27/287 (9%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           M SYRH+FHAGNHADVLKHI     L  L QKE      DTH+G G Y L  +++E  GE
Sbjct: 1   MFSYRHAFHAGNHADVLKHITLIATLRHLMQKEAGMTLIDTHAGAGLYRLDGDYTETGGE 60

Query: 61  YKQGIARIW---------QQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLR-- 109
            K G+ ++            + +   +D YLD +   N    LR YPGSP V    LR  
Sbjct: 61  AKDGVVKLMGALRAADGPSTEAVAPAIDDYLDLVAGFNPSGALRVYPGSPFVMHQLLRTE 120

Query: 110 EQDRMVLTELHPSDYPLLE---QEFHRDRQVSIYKEDGFARLKASLPPQ-----ERRGLV 161
            +DR+ L ELHP+D   L     +    RQ+++ +EDGF  +K  LPP       +R LV
Sbjct: 121 SRDRLKLFELHPTDSRTLSGNIAQLEAGRQITVAREDGFEGVKPLLPPPPSATGSKRALV 180

Query: 162 LIDPPYELAKEYRDVVRAIAQSYKRWATGIYAIWYPVVNRCDIDDM---LEGLQGLEIRK 218
           LIDP YE+  +Y  V   I +  +R+ TG Y +WYPV+ R +  D+   L  L     + 
Sbjct: 181 LIDPSYEIKSDYGKVSACIQELIRRFPTGTYLVWYPVIPRPEAHDLPRRLRTLSNQAQKP 240

Query: 219 ILQIELGVAPD-----TNERGMTASGMIVINPPWTLESQMQTILPFL 260
            L   L +  D      +  G+TASGM VINPP TL+  +Q  LP L
Sbjct: 241 WLNATLAIGQDPTHGPDDRPGLTASGMFVINPPHTLKGTLQAALPQL 287