Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Ribosomal RNA large subunit methyltransferase J from Methylophilus sp. DMC18

 Score =  233 bits (594), Expect = 3e-66
 Identities = 128/271 (47%), Positives = 170/271 (62%), Gaps = 5/271 (1%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           MLSYRH+FHAGNHADVLKH + SL+L+   QK+KP+   DTH+G G Y L    + KT E
Sbjct: 1   MLSYRHAFHAGNHADVLKHWIFSLVLDYFNQKDKPYWVVDTHAGAGLYRLDSSVANKTAE 60

Query: 61  YKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTELH 120
           Y  GI R+ QQ   P     YL+A+   N+ + +  YPGSP +A   +   D++ L ELH
Sbjct: 61  YVDGIQRL-QQSQAPEPFQIYLEAVAAANKDQPM-LYPGSPWLASHLINPVDKLRLFELH 118

Query: 121 PSDYPLLEQEF-HRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVRA 179
           P+D  LLEQ+F  + RQ++I ++DGF  +KA LPP  +RG+VLIDPPYE+  +Y  VV  
Sbjct: 119 PADAALLEQQFASQKRQIAIQQKDGFEGIKACLPPPTKRGIVLIDPPYEVKDDYARVVDC 178

Query: 180 IAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGV-APDTNERGMTAS 238
           I  S KR+ATG Y IWYP + R +   M++ L+ LE    L + L V  P  +  GM  S
Sbjct: 179 IKDSLKRFATGTYLIWYPRLQRPEPQQMIDKLRRLE-TDFLHVTLDVEQPSADGFGMYGS 237

Query: 239 GMIVINPPWTLESQMQTILPFLKQAIAPATG 269
           GM VINPPWTL   ++  LP+L Q +A   G
Sbjct: 238 GMWVINPPWTLRQSVEPHLPWLAQVLAQDAG 268