Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., Protein involved in catabolism of external DNA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  365 bits (937), Expect = e-106
 Identities = 171/280 (61%), Positives = 214/280 (76%), Gaps = 1/280 (0%)

Query: 1   MLSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGE 60
           MLSYRHSFHAGNHADVLKH VQSLI+ SL++KEKPF+Y DTH+G GRY L  E +E+TGE
Sbjct: 1   MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKEKPFLYLDTHAGAGRYQLGSEHAERTGE 60

Query: 61  YKQGIARIWQQDNIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVLTELH 120
           Y +GIARIWQQD++PAEL+ Y+  ++  N+   LRYYPGSP +AR  LREQD + LTELH
Sbjct: 61  YLEGIARIWQQDDLPAELEPYISVVKHFNRSGQLRYYPGSPLIARQLLREQDSLQLTELH 120

Query: 121 PSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYELAKEYRDVVRAI 180
           PSD+PLL  EF +D +  + + DG+ +LKA LPP  RRGL+LIDPPYE+  +Y+ VV  I
Sbjct: 121 PSDFPLLRAEFQKDNRARVERADGYQQLKAKLPPVSRRGLILIDPPYEMKTDYQAVVSGI 180

Query: 181 AQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGMTASGM 240
           ++ YKR+ATG YA+WYPVV R  I  M+  L+   IRKILQIEL + PD+++RGMTASGM
Sbjct: 181 SEGYKRFATGTYALWYPVVLRQQIKRMIHELEATGIRKILQIELAIRPDSDQRGMTASGM 240

Query: 241 IVINPPWTLESQMQTILPFLKQAIAP-ATGHYKVEWVVPE 279
           IV+NPPW LE QM  +LP+L   +AP   GH  V W+VPE
Sbjct: 241 IVVNPPWKLEQQMNNVLPWLHSRLAPNGHGHTSVSWIVPE 280