Pairwise Alignments

Query, 279 a.a., 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ from Vibrio cholerae E7946 ATCC 55056

Subject, 285 a.a., Ribosomal RNA large subunit methyltransferase J from Acinetobacter radioresistens SK82

 Score =  201 bits (512), Expect = 1e-56
 Identities = 106/288 (36%), Positives = 164/288 (56%), Gaps = 13/288 (4%)

Query: 2   LSYRHSFHAGNHADVLKHIVQSLILNSLQQKEKPFVYHDTHSGVGRYDLTHEWSEKTGEY 61
           ++YRH FHAGN ADV+KH++   +L  L  K+KP+ Y DTH G G+YDL+   ++K+GE+
Sbjct: 1   MNYRHHFHAGNFADVMKHVLLLQLLTRLNSKDKPYRYIDTHGGAGQYDLSSAPAQKSGEF 60

Query: 62  KQGIARIWQQD-----NIPAELDSYLDAIRQLNQGETLRYYPGSPRVARAHLREQDRMVL 116
             GI R+ + D     N P  +  YL  +  +   +    YPGSP  A   +R+ D+  +
Sbjct: 61  LTGIHRLVKLDDSVKRNAPEGVQQYLKLVESMRSQQGQGAYPGSPWFALQGMRDIDKATV 120

Query: 117 TELHPSDYPLLEQEFHRDRQVSIYKEDGFARLKASLPPQERRGLVLIDPPYEL-AKEYRD 175
            E+    +  L     RD +  ++K D +  L A +PP+E+RGLV+IDPPYEL  K++  
Sbjct: 121 FEMQRDVFQQLRDNI-RDSRAGLHKRDAYEGLLAVIPPKEKRGLVMIDPPYELERKDFPQ 179

Query: 176 VVRAIAQSYKRWATGIYAIWYPVVNRCDIDDMLEGLQGLEIRKILQIELGVAPDTNERGM 235
           +V  +  +YK+W TGI+A+WYP+ +R  I+   + +    IR+ L  E+ V PD    G+
Sbjct: 180 LVELLQNAYKKWPTGIFAVWYPIKDRAMIERFEKKMMKTGIRRQLICEICVWPDDTPVGL 239

Query: 236 TASGMIVINPPWTL----ESQMQTILPFLKQAIAPATGHYKVEWVVPE 279
              G++VINPPW      +  +Q + P L+  +    GH  V W+V E
Sbjct: 240 NGCGLLVINPPWKFSEDADEALQWLFPHLR--MQEIGGHAAVRWLVGE 285