Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 383 a.a., site-specific integrase from Paraburkholderia sabiae LMG 24235

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 84/363 (23%), Positives = 135/363 (37%), Gaps = 47/363 (12%)

Query: 33  GFPTFYSKDHEYLLPVNLWFNYLVNIRKAVDITASVR----ALKRYWQFLETNNYSWDNF 88
           G P     + E +   N +  YL  I+       + R    AL  ++ FLE +  +WD  
Sbjct: 19  GVPFLCDGEMELVDAPNRYLRYLSTIKGRTRAENTWRTYGAALYEFFAFLEASGLAWDR- 77

Query: 89  PANDYLKPTYRFRNDDLLKAARSGEI----AFSTASMYILHVIKFYEWAAHERFITFTEE 144
                        N   + A R G +    A ST +  +  V  FY W+           
Sbjct: 78  ------------ANQSQIAAWRDGMLERGCARSTVNQRLRTVDVFYVWSKSNGMT----H 121

Query: 145 NKPFNYQIVHIANS-GMMSH---NNPRFTVRSTDLRIRKPARNEQQKLNPLSQQELLFFA 200
           + PF+   V +A   G ++H   +  RF   +  ++  K           L   + + F 
Sbjct: 122 SVPFDRTDVWVAKPHGFLAHVDGSGSRFDANALTVQTHKAVPKF------LHLNQAIRFL 175

Query: 201 DCLKECSDEFIIHQLLQIQSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVH-TKF 259
           D L       + +  L + +G+R EE     + ++  P     + +V + +   +  TK 
Sbjct: 176 DALTPYRLRLMGY--LALLTGMRREEVVGLNYRVLPNPAGRDPQKQVPMRLDPSLTPTKG 233

Query: 260 NKTRKVEIPNQLMRKMYDYSV---SERRLKREKKTDGVNKTLLLNNLGNPLCSNNIQQHF 316
            K R V +P  L   +Y+Y      +  +K   K       L L   G+PL  N +   F
Sbjct: 234 AKERIVMLPYDLAIALYEYFTFGWPKLSVKYRAKFGEEPTLLFLAESGDPLSVNGLNNAF 293

Query: 317 RRLRHHIQNKHNIVFSHRTHDLRATYGTYRLDSLLDHLPVGDALALIMGWMGHKDDKTTW 376
           RR    +  K  I  +   H LR T+GTY L  +        AL  +   MGH    TT 
Sbjct: 294 RR----VSQKSGIWCT--PHMLRHTFGTYELIRMGREKTPSQALLWVRDRMGHSSITTTE 347

Query: 377 KYL 379
            Y+
Sbjct: 348 IYV 350