Pairwise Alignments

Query, 404 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 513 a.a., Site-specific recombinase XerD from Alteromonas macleodii MIT1002

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 100/391 (25%), Positives = 165/391 (42%), Gaps = 82/391 (20%)

Query: 69  RALKRYWQFLETNNYSWD--------------NFPANDYLKP------TYRFRN----DD 104
           +AL  ++ FL      WD                P+ +Y+ P      TY++R       
Sbjct: 92  KALIHFFSFLTALQEKWDAENDGDLFDEVLGLQRPSWNYMAPRKAHRITYQYRAALKYSV 151

Query: 105 LLKAARSGEIAFSTASMYILHVIKFYEWAAHERFITFTEENKPFNYQIVHIANSGMMSHN 164
           + ++ ++  +A +TAS Y+  V+KFY +   +        N PF ++   I     ++  
Sbjct: 152 INESDKNLRLARTTASAYMNAVVKFYSYHIRQGH---KFNNPPFEHETYTIHFEAPLNSM 208

Query: 165 NPRFT--VRSTDLRIRKPA--RNE-------QQKLNPLSQQELLFFADC----------- 202
               T  V++TDLR+  P   RNE       ++ L PL+ ++ L   +            
Sbjct: 209 KSYMTKAVQTTDLRLNFPKSKRNEGGVIPEARRDLAPLTNKQWLEVENIILNTRKVLKNV 268

Query: 203 -----LKECSDEFIIHQLLQIQSGLRVEEACTFPFSIVEMPNPHIHRYEVEIGIHNGVHT 257
                L   ++E+ +  L+   SGLR EEA +     V  PN       + IG   G  T
Sbjct: 269 NGQKKLTRLAEEYCLLFLVIRYSGLRKEEAASLHCGQVVKPNLEQPIMRLGIGCEYGSLT 328

Query: 258 KF----NKTRKVEIPNQLMRKMYDYSVSERRLKREKK-------------------TDGV 294
           K     NK+RK  IP   M+ +Y+YS S+R LKR +K                    DGV
Sbjct: 329 KSKSGTNKSRKTIIPCSTMQMLYEYSCSQRYLKRLEKFRALCQNKRESGDVAFFESIDGV 388

Query: 295 NKT---LLLNNLGNP--LCSNNIQQHFRRLRHHIQNKHNIVFSHRTHDLRATYGTYRLDS 349
           ++    L ++N G P  L  N +   +  +R  ++       +   H+LR+T+      +
Sbjct: 389 DENKDYLFISNSGIPFFLKLNELNNRWNEVRSTVEEVLGQKVNGSIHNLRSTFAVAIFRA 448

Query: 350 LLDHLPVGDALALIMGWMGHKDDKTTWKYLR 380
           LL  +    ALA++   +GH+D KTT  YL+
Sbjct: 449 LLRKVSSDIALAIVSDLLGHEDIKTTMLYLK 479