Pairwise Alignments

Query, 703 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 671 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score =  102 bits (254), Expect = 6e-26
 Identities = 87/355 (24%), Positives = 167/355 (47%), Gaps = 38/355 (10%)

Query: 205 QFYAIPTRLMEKIYRYCFDVVETYHPYKEEIHELL---YDMRQNYEEGKRRVDDKIQSGI 261
           Q  AIP R+  ++  +   VVETYHPY+ EI  ++   YD+ +   +G   + D+  +G 
Sbjct: 174 QHIAIPIRIYAQLLSHAIKVVETYHPYRYEIARVMGEAYDVAREIRDGGNLLSDQRANGS 233

Query: 262 WQWISEESNEYRVEVNKHQPASYSSIIDAHIKDTHLESLLPKSALRIQGTII-EIQTICF 320
              +S +    R  +        S ++   I D  ++         ++G  + ++Q+ C 
Sbjct: 234 RAHLSMK----REAIENRITRGISKLVRHSIPDFKVD---------LEGKQLGQLQSACS 280

Query: 321 IVCGALTGMRRSELFCLHSNSFKEKEMYGKKYYT-LQSEQHKFSQGRGKMAEWVTTKFTQ 379
           +V  A +G+R  E     ++S++ K++  ++  + L+ +  K S G  + A W +    +
Sbjct: 281 LVTLAFSGVRIGESVSFSASSYEVKKIDEQREISVLRGKTSKGSDGTPRTATWQSHYIVK 340

Query: 380 KAIELAEAISRYMR------IQLL-------EDDDPMSVHNSSCLWLGQGRKSQKPIIRQ 426
            A+ELA+ +S  +R      I+ L       ED    ++++ +  ++      QK    +
Sbjct: 341 DALELAQEMSEPLRQKYREKIERLYKSGEYREDQYRKALNDVASAFIPLKPSVQKNTYVK 400

Query: 427 DNNMRTHFLKICEKAGALITEDDLDEFRVINPNREPNNADERLKVGNVWP-LTTHQLRRT 485
            N+ R    K+ +K     T++D++EF ++NP R        L+VG   P LT H  RR+
Sbjct: 401 SNDAR-QLTKLLQKYEIRATKEDVEEFDLLNPTRAGE-----LEVGEYLPKLTPHDFRRS 454

Query: 486 FAVFSKRHNLCHDIAIKEQFKHLDLPTTEWYGEGGLASKIKALQIDTELQSFLND 540
           FAVF KR+       IK Q+KH ++  +++Y        +  + +D +L   + +
Sbjct: 455 FAVFFKRYGFGSAAGIKFQYKHENINMSDYYANNAQLMHMNDVLMDIDLLKLMEE 509