Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 346 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score =  192 bits (489), Expect = 7e-54
 Identities = 111/290 (38%), Positives = 172/290 (59%), Gaps = 20/290 (6%)

Query: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHF 79
           L  FL +  A++   +  + V  A++AP++ P +P ++       A  P  W  G N  F
Sbjct: 73  LLVFLSNPTAVAGLLILAVVVGAALAAPILFPDDPLEM-------AGRPLQW-PGQNPRF 124

Query: 80  LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFAD 139
            LGTD  GRD+ + +++G+R+SL +G  A    L  GI++G +AGYFGG +D  L +  +
Sbjct: 125 PLGTDALGRDVLAGLVHGARVSLLVGACATLAGLLAGILVGATAGYFGGVVDDVLSKLIE 184

Query: 140 IQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKK 199
           I  +    ++ I++ AI          +Q +V  + + I    WPQ AR VRA   A K+
Sbjct: 185 IFQTVPGFILLIVLVAI----------AQPSVPAIALAIAAVSWPQVARLVRAQFRAIKE 234

Query: 200 KEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQP 259
           K++V AAR +GF   RI+FR ILPN L P++V+++V VA AI+ E+ALSF+GLG P +  
Sbjct: 235 KDFVAAARALGFGHGRIIFREILPNALPPVIVLASVTVATAILMESALSFMGLGDP-NVV 293

Query: 260 SLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
           S GS+I  G   +   AW+++A PG+ +VL VL +NL+GD L +  NP++
Sbjct: 294 SWGSMIGTG-RDLLRTAWYLSAVPGVAIVLTVLSLNLIGDGLNEALNPRL 342