Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 284 a.a., peptide ABC transporter permease from Pseudomonas simiae WCS417

 Score =  177 bits (449), Expect = 3e-49
 Identities = 108/274 (39%), Positives = 160/274 (58%), Gaps = 17/274 (6%)

Query: 38  LFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQGRDIFSTILYG 97
           L V++   A +    +P+D   ID+M     PS       H+L GTDE GRD+FS +L G
Sbjct: 28  LLVVLIALALMGLVWSPFDPLKIDLMSRFQAPS-----AAHWL-GTDEFGRDVFSRLLIG 81

Query: 98  SRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIF 157
           +R SL +  L V + +  G +IG+ AGY  G  D  LM F D  L+F  +++A+ + AI 
Sbjct: 82  ARTSLWVSLLTVSVAVLAGTLIGMLAGYLRGWTDRVLMMFNDALLAFPGILMALGIMAII 141

Query: 158 KASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIM 217
            AS  G          +V+ +G+A  P   R VR +VL+ ++ EY+EA+RV+G      M
Sbjct: 142 GASKYG----------IVLALGIAYTPSVVRVVRGTVLSLRELEYIEASRVIGNSELYTM 191

Query: 218 FRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAW 277
            RHI PNCL+P+ V++T     A++SE+ALSFLGLG+P    + G++++    YI S A 
Sbjct: 192 LRHIAPNCLAPLCVLATSMFGWALLSESALSFLGLGVPPPAATWGNMLASSRPYIAS-AP 250

Query: 278 WITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311
           W+  FPG+ + L +L INL GD LRD  +P++ K
Sbjct: 251 WLGVFPGLFICLTLLAINLFGDALRDRLDPRMRK 284