Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 326 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  207 bits (527), Expect = 3e-58
 Identities = 116/287 (40%), Positives = 177/287 (61%), Gaps = 20/287 (6%)

Query: 23  FLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLG 82
           FLR+  A++   + V  +I+A+ APL+ P +P D+ +        PP    G +  + LG
Sbjct: 57  FLRNPAAVAGVVLLVCMLILALLAPLLYPGDPLDMVA--------PPLLWPGQDAAYPLG 108

Query: 83  TDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQL 142
           +D  GRD+ + I +G+R+SL +G +A  L L +G+++G +AGYFGGRID  L+R  ++  
Sbjct: 109 SDSLGRDVIAGIAHGARVSLAVGVVAAVLSLVIGVLVGATAGYFGGRIDDVLVRITELFQ 168

Query: 143 SFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEY 202
           +  + +  I+V AI           Q +V ++V  IG+A WP  AR VRA   A ++ E+
Sbjct: 169 TMPSFLFVIVVVAI----------GQPSVPVIVCAIGLASWPVIARLVRAEFRALRETEF 218

Query: 203 VEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLG 262
           V AAR  GF   RI+F+ +LPN L P++V ++V VA+AI+ E+ALSFLG+G P +  S G
Sbjct: 219 VLAARSQGFSHARIIFQEMLPNALPPVIVTTSVLVASAILIESALSFLGMGDP-NAVSWG 277

Query: 263 SLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
           S+I  G   +   AW++TA PG  +VL VL +NL+GD L D FNP++
Sbjct: 278 SMIGQG-RELLRTAWYLTALPGAAIVLTVLALNLVGDGLNDAFNPRL 323