Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  180 bits (457), Expect = 3e-50
 Identities = 101/290 (34%), Positives = 164/290 (56%), Gaps = 21/290 (7%)

Query: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHF 79
           L  FLR+  A++  A+ ++ + VAI+ P + P +P+++ +     A L P + E      
Sbjct: 32  LRMFLRNPAAIAGMAMLLIVLAVAIAGPWVYPADPFEIKA-----APLTPPFSEDA---- 82

Query: 80  LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFAD 139
            LG+D  GRD+ + ++YG R +L +G +A  L + +GI +G  AGY+GG+ID+ LM+  +
Sbjct: 83  WLGSDYLGRDVLTALIYGGRATLLVGAVAALLSVLIGITLGAFAGYYGGKIDAALMKLTE 142

Query: 140 IQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKK 199
                  ++ A++V  +F  +          +V + + IG+  W   AR  RA  +  + 
Sbjct: 143 FFQVLPALLFAMVVVTLFSPT----------LVTVTLAIGIVSWTGTARLTRAEFMKYRG 192

Query: 200 KEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQP 259
            E+V A R +G    RI+++ ILPN L P++V +T+ +  AI+ EA LSFLGLG P +Q 
Sbjct: 193 LEFVRAERAIGAGDARIIWKVILPNALPPLVVSATLAIGAAILFEAGLSFLGLGDP-NQM 251

Query: 260 SLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
           S G +I     Y+ S  WW  AFPG  + + VL ++L+GD L D  NPK+
Sbjct: 252 SWGLMIGSSRQYVLS-CWWAVAFPGAAIFITVLAVSLIGDGLNDALNPKL 300