Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 274 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  182 bits (461), Expect = 1e-50
 Identities = 112/292 (38%), Positives = 173/292 (59%), Gaps = 21/292 (7%)

Query: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHF 79
           L   +  ++ M S  V ++  ++AI APL A  +P D + ++ + A   PS      EH 
Sbjct: 2   LRQLMHRRIVMVSALVLLVIAVMAIGAPLFASADPNDTAVLERLKA---PS-----AEH- 52

Query: 80  LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFAD 139
           LLGTDE GRD++S I++G+R SL I  L     +  G V+GL AG+F  R+D+ LMR  D
Sbjct: 53  LLGTDELGRDMYSRIVHGARYSLAIAALTALGAVVAGTVLGLMAGFFR-RLDAPLMRVVD 111

Query: 140 IQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKK 199
             +SF  +++AI + AI   S          +V  V+ + +   P+ AR VRAS L  ++
Sbjct: 112 AMMSFPDILLAIALVAILGPS----------LVNTVLALVLVYTPRVARVVRASTLVVRE 161

Query: 200 KEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQP 259
             +VEA R +G +  RI++RHILPN +SPILV  +   A AI++EA LSFLG+G+P + P
Sbjct: 162 LLFVEAVRALGVRTSRILWRHILPNLMSPILVQVSFIFAYAILAEAGLSFLGVGVPPEIP 221

Query: 260 SLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311
           + G++++    Y    A+W+  FPG+ ++   L + LLGD +RD+ +PK+ K
Sbjct: 222 TWGTMVAGSQQYAHQ-AFWVVLFPGLAIIFTALSLQLLGDGVRDLLDPKLKK 272