Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 303 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  316 bits (810), Expect = 4e-91
 Identities = 151/297 (50%), Positives = 216/297 (72%), Gaps = 1/297 (0%)

Query: 13  RFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWM 72
           R+  SD  Y F    VA+++  + ++ V+ A+ A  ++P NP+DL+++++ DA LPP+W 
Sbjct: 7   RWLDSDVGYSFRTSPVAIAAALIALVCVVCAVFAGWVSPHNPFDLAALELGDARLPPAWS 66

Query: 73  EGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDS 132
             G+  +LLGTD+QGRDI S ++YG+R+SL +G ++V L + +G+V+GL AG+FGG +DS
Sbjct: 67  AEGSSKYLLGTDDQGRDILSAVIYGARISLIVGLVSVVLSVVVGVVLGLLAGFFGGWLDS 126

Query: 133 FLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRA 192
           FLMR  D+ LSF  ++VA++++ + +A F G   S  A  +L+V I +  W QYARTVR 
Sbjct: 127 FLMRVCDVMLSFPPILVALLIAGVGRALFPGAHES-LAFGVLIVSISLTGWVQYARTVRG 185

Query: 193 SVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGL 252
           S L E+ KEYV+AARV G    RIM RH+LPN L P+ V++T+QVA AI++EA LSFLG+
Sbjct: 186 STLVERNKEYVQAARVTGVAPMRIMLRHVLPNVLGPVTVLATIQVATAIITEATLSFLGV 245

Query: 253 GLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
           G+P   PSLG+LISIG  Y+FSG WWIT FPG++LVL+ L +NLLGDWLRD  NP++
Sbjct: 246 GVPPTSPSLGTLISIGNQYLFSGEWWITVFPGLMLVLIALSVNLLGDWLRDALNPRL 302