Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  186 bits (473), Expect = 4e-52
 Identities = 104/285 (36%), Positives = 159/285 (55%), Gaps = 20/285 (7%)

Query: 24  LRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGT 83
           +R    +    +    V+ A+ AP +AP +P   ++ ++    LPP     G  H+L GT
Sbjct: 32  VRSPAMVFGLVILAAMVLAALFAPWLAPFDP---NAQNVQQRLLPP-----GAAHWL-GT 82

Query: 84  DEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLS 143
           D+ GRD+ S ++YG+R +L I  L   L   LG+++G+ AGYFGG ID+ LMR  DI ++
Sbjct: 83  DQLGRDLLSRVIYGTRPTLLIVSLVALLSAPLGLLLGMCAGYFGGWIDTLLMRVTDIFMA 142

Query: 144 FSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYV 203
           F  +++A+ + A+              +V  V+ I +  WP YAR  R      +  +++
Sbjct: 143 FPRLVLALALVAVLGPG----------IVNAVIAIAITAWPAYARIARTETRTVRGSDFI 192

Query: 204 EAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGS 263
           +AARV G +  RI+F H+LP CL   +V  T+ +A  I++ A L FLGLG        G+
Sbjct: 193 QAARVQGLRPARILFGHLLPICLPSTVVRVTLDMAGIILTAAGLGFLGLGAQPPMSEWGA 252

Query: 264 LISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
           +IS G  YIF   WW+ A PG+ ++L  L  NL+GD LRDV +PK
Sbjct: 253 MISTGRQYIFD-QWWVAAVPGVAILLGSLAFNLVGDGLRDVLDPK 296