Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  204 bits (518), Expect = 3e-57
 Identities = 110/284 (38%), Positives = 174/284 (61%), Gaps = 20/284 (7%)

Query: 25  RDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTD 84
           +++++     + V+ V+VA+ APLIAP +P   +    ++   PPS        F LGTD
Sbjct: 21  QNRLSWIGIGLLVMIVLVALFAPLIAPYDPLQQNIAYRLE---PPS------AEFWLGTD 71

Query: 85  EQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSF 144
             GRD+ S ++YG+R+SL +GF+AV + + +G  +G+ AGY GG  D  +  F D+ LSF
Sbjct: 72  TYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGGITDRLITGFVDVLLSF 131

Query: 145 STMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVE 204
            T+++ ++V+A+  AS             L++ I + E   + R  RA  +A K++++VE
Sbjct: 132 PTLLLGLMVAAMLGASLEN----------LIIAIAITEIAPFVRIARAPTIALKQRDFVE 181

Query: 205 AARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSL 264
           A R +G+   R+M  HILPN +S +LV+  + +A AI +EA+LSF+GLG+P   P+ GS+
Sbjct: 182 AGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPAPTWGSM 241

Query: 265 ISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
           I  GF  I   AWW+T FP + ++L VL ++LLGD LRD  +PK
Sbjct: 242 IREGFENILD-AWWLTVFPSLAILLTVLALSLLGDALRDANDPK 284