Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  212 bits (539), Expect = 1e-59
 Identities = 114/302 (37%), Positives = 179/302 (59%), Gaps = 19/302 (6%)

Query: 8   PSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAEL 67
           PS ++ F Q+     F R+K A+   A   L V  A+ AP +AP +P +     ++    
Sbjct: 22  PSPYKEFWQA-----FARNKGAVMGLAFMCLVVFCALFAPWVAPHDPSEQYRDFLLT--- 73

Query: 68  PPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFG 127
           PP W+EGG   F+LGTDE GRD+ S ++ G+RLSL IG  +V + L  GI++GL AG+F 
Sbjct: 74  PPVWLEGGTWQFILGTDELGRDLLSRLIQGARLSLLIGLSSVVMSLIPGILLGLLAGFFP 133

Query: 128 GRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYA 187
             +   +MR  D+ L+  ++++A+ + AI              ++  V+ I +   P Y 
Sbjct: 134 QLLGPSIMRLMDVMLALPSLLLAVAIVAILGPG----------LINTVIAIAIVSLPSYV 183

Query: 188 RTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAAL 247
           R  RA+V+ E  ++YV AAR+ G   PR+MF  +LPNC++P++V +T+  ++AI+  AAL
Sbjct: 184 RLTRAAVMGELNRDYVTAARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAAL 243

Query: 248 SFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307
            FLGLG+    P  G++++    YI   AWW+ + PG+ ++L VL INL+GD LRD  +P
Sbjct: 244 GFLGLGVQPPTPEWGTMLASARDYI-ERAWWVVSLPGLTILLSVLAINLMGDGLRDALDP 302

Query: 308 KI 309
           K+
Sbjct: 303 KL 304