Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., ABC-type dipeptide/oligopeptide/nickel transport systems, permease components from Enterobacter asburiae PDN3

 Score =  231 bits (590), Expect = 1e-65
 Identities = 122/293 (41%), Positives = 182/293 (62%), Gaps = 16/293 (5%)

Query: 18  DFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAEL-PPSWMEGGN 76
           +F +YF R+K A+      V+ +++A+ A  +AP NP D       DA L PP+W +GG+
Sbjct: 21  EFWHYFKRNKGAVVGLVYVVIMILIAVFANFLAPYNPAD----QFRDALLAPPAWQDGGS 76

Query: 77  EHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMR 136
              LLGTD+ GRD+ S ++YG+RLSL +G L V L L +G+V+GL AGYFGG +D+ +MR
Sbjct: 77  LTHLLGTDDVGRDVLSRLMYGARLSLLVGCLVVVLSLIMGVVLGLVAGYFGGIVDNIIMR 136

Query: 137 FADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLA 196
             DI L+  ++++A+++ AIF  S G    +   V +          P Y R  RA+VL 
Sbjct: 137 IVDIMLALPSLLLALVLVAIFGPSIGNAALALTFVAL----------PHYVRLTRAAVLV 186

Query: 197 EKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPV 256
           E  ++YV A+RV G  A R MF +I PNCL+P++V +++  +NAI+  AAL FLG+G   
Sbjct: 187 EVNRDYVTASRVAGAGAMRQMFVNIFPNCLAPLIVQASLGFSNAILDMAALGFLGMGAQP 246

Query: 257 DQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKI 309
             P  G+++S    +  S AWW+  FPG+ ++L VL  NL+GD LRD  +PK+
Sbjct: 247 PTPEWGTMLSDVLQFAQS-AWWVVTFPGLAILLTVLAFNLMGDGLRDALDPKL 298