Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., dipeptide ABC transporter permease DppC from Dickeya dianthicola ME23

 Score =  227 bits (579), Expect = 2e-64
 Identities = 123/309 (39%), Positives = 188/309 (60%), Gaps = 18/309 (5%)

Query: 2   SAVSIAPSRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSID 61
           SA + AP      ++  F +YF R+K A+   A  +L +++A+ A ++AP  P +     
Sbjct: 7   SAATTAPKPMTPLQE--FWHYFKRNKGAVVGLAYIILMLVLAVGASVLAPHAPAE----Q 60

Query: 62  IMDAEL-PPSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIG 120
             DA L PP W +GG+  ++LGTD+ GRD+ S ++YG+RLSL +G L V + L LG+V G
Sbjct: 61  FRDALLKPPVWQDGGSWQYILGTDDVGRDVLSRLMYGARLSLLVGCLVVVMSLVLGVVFG 120

Query: 121 LSAGYFGGRIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGV 180
           L AGYFGG +D+ +MR  DI L+  ++++A+++ AIF  S          +V   + +  
Sbjct: 121 LVAGYFGGTVDAAIMRLVDIMLALPSLLLALVLVAIFGPS----------IVNASLALTF 170

Query: 181 AEWPQYARTVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANA 240
              P Y R  RA+VL E  ++YV A+RV G    R MF +ILPNCL+P++V +++  +NA
Sbjct: 171 VSLPHYVRLTRAAVLVEVNRDYVTASRVAGAGPLRQMFVNILPNCLAPLIVQASMGFSNA 230

Query: 241 IMSEAALSFLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDW 300
           I+  AAL FLG+G     P  G+++S    +  S AWW+  FPG+ ++L VL  NL+GD 
Sbjct: 231 ILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQS-AWWVVTFPGLAILLTVLAFNLMGDG 289

Query: 301 LRDVFNPKI 309
           LRD  +PK+
Sbjct: 290 LRDALDPKL 298