Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 302 a.a., putative D,D-dipeptide transport system permease protein DdpC from Azospirillum sp. SherDot2

 Score =  191 bits (484), Expect = 2e-53
 Identities = 114/292 (39%), Positives = 172/292 (58%), Gaps = 21/292 (7%)

Query: 20  LYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHF 79
           L    R ++ + SF V    + VA+ AP I P NP   + +DI+    PP+       H+
Sbjct: 30  LRQLFRRRLVVLSFLVMAAILAVALLAPWITPFNP---AKMDILGRLKPPT-----AAHW 81

Query: 80  LLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFAD 139
             GTDE GRD+ S ++ G+RLSL +G L V +   LG ++GL+AGY    +D  LMR  D
Sbjct: 82  F-GTDEYGRDVLSRVMLGARLSLLVGLLVVVVATVLGTLLGLAAGYIRP-LDGLLMRLTD 139

Query: 140 IQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKK 199
             ++F  +++AI     F A+ G   ++      +V+ +G+   P+ AR VRA+ L  ++
Sbjct: 140 ALMAFPDILLAIA----FMAALGPSLYN------VVLALGIVYTPRVARVVRAACLVVRE 189

Query: 200 KEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQP 259
             ++EAA  +G   PRI+F HILPN +SPILV +T   A AI++EAALSFLG+G+P   P
Sbjct: 190 MPFIEAATALGASTPRIVFLHILPNLMSPILVQATFIFAYAILTEAALSFLGVGVPPTTP 249

Query: 260 SLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPKIYK 311
           + G++I+    Y F  A W+  FPG  +VL VL + ++GD LRD  +P++ K
Sbjct: 250 TWGNMIASAQQY-FQQADWLILFPGCAIVLTVLSLQIVGDGLRDALDPRLQK 300