Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 268 a.a., dipeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  184 bits (468), Expect = 2e-51
 Identities = 106/284 (37%), Positives = 165/284 (58%), Gaps = 20/284 (7%)

Query: 25  RDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTD 84
           R+K A++   + + F ++AI+AP++   +P   S   I  A     W         LGTD
Sbjct: 3   RNKSALAGLIIVLFFAVLAIAAPILPIADPVATSWSAIRKAPSAAHW---------LGTD 53

Query: 85  EQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSF 144
           + GRDI S ++YG+R SL  G ++V + + +G+  GL AGYFGG +D  + R  +  L+ 
Sbjct: 54  DLGRDILSRMIYGARASLMAGVVSVMIAVVIGVPFGLIAGYFGGWVDMVISRITEALLAM 113

Query: 145 STMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVE 204
             +++AI ++A    S          +   ++ IG++  P + R  R  VLA K ++YVE
Sbjct: 114 PFLIMAIALAAFLGPS----------LTNAMIAIGLSAMPIFVRLTRGQVLAVKMEDYVE 163

Query: 205 AARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSL 264
            AR +G     IM R+ILPN  +PI+V +T+ VA AI++EA+LSFLGLG     PS GS+
Sbjct: 164 GARSIGLNHIDIMTRYILPNVFAPIIVQATLTVATAIIAEASLSFLGLGQQAPAPSWGSM 223

Query: 265 ISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
           ++    ++ S A W+T +PGI + L+V+  NLLGD LRD  +P+
Sbjct: 224 LNTAKNFL-SQAPWMTLWPGIAIFLVVIGFNLLGDGLRDALDPR 266