Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 282 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  192 bits (488), Expect = 8e-54
 Identities = 110/299 (36%), Positives = 173/299 (57%), Gaps = 28/299 (9%)

Query: 9   SRWERFKQSDFLYYFLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELP 68
           SR  RF   +F+         + +F   V+ + V  S  L     P     ID+M     
Sbjct: 6   SRLSRFANLEFV---------LGAFLTTVICLAVVFSDVLF----PGGADKIDLMARLAK 52

Query: 69  PSWMEGGNEHFLLGTDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGG 128
           P      N    LGTD  GRD+ + ++ G ++SL +GF +V   +  G+ +GL AGY+ G
Sbjct: 53  PF----ANAAHPLGTDPLGRDVLARVVAGGKISLLVGFTSVIGAVIFGVAVGLVAGYYRG 108

Query: 129 RIDSFLMRFADIQLSFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYAR 188
             D  +MRFADIQL+   +++AI   AI   S          +   ++++ +++W QYAR
Sbjct: 109 FWDMLVMRFADIQLAMPFILLAITFIAIVGGS----------LTNTIILLIISQWVQYAR 158

Query: 189 TVRASVLAEKKKEYVEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALS 248
            VR SVL  +++E++ +AR +G K  RI+ +H+LPN + P++V+ T+ VAN I+ E++L+
Sbjct: 159 LVRGSVLTLREREFILSARAIGVKDWRIILQHLLPNLIGPVIVLMTLNVANNILLESSLT 218

Query: 249 FLGLGLPVDQPSLGSLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNP 307
           FLGLG+    PS G +++ G TY+   AWW++ FPG+ ++L VL +NLLGDWLRD  +P
Sbjct: 219 FLGLGVDPTIPSWGGMLADGRTYL-QTAWWVSVFPGLAILLTVLGLNLLGDWLRDSLDP 276