Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 310 a.a., oligopeptide ABC transporter permease from Agrobacterium fabrum C58

 Score =  186 bits (472), Expect = 6e-52
 Identities = 100/286 (34%), Positives = 162/286 (56%), Gaps = 18/286 (6%)

Query: 23  FLRDKVAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLG 82
           F  +++A+    + +  + VA+ A ++AP NP      D+ +A L P     G   +LLG
Sbjct: 39  FSENRLALLGLVIIIALLFVALFADVLAPHNPVQG---DLRNARLLPP----GTAGYLLG 91

Query: 83  TDEQGRDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQL 142
           TD+QGRDI S +++GSRL+L +  L   +   +G+++G  +GY GG +D+ LMR  DI L
Sbjct: 92  TDDQGRDILSRLIHGSRLTLFVVLLVAIIAAPIGLIVGTVSGYAGGWVDAILMRITDIFL 151

Query: 143 SFSTMMVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEY 202
           +F  +++A+ + A               +   V+ I V  WP YAR  RA  +  +  ++
Sbjct: 152 AFPKLVLALALVAALGPG----------IENAVLAIAVTSWPPYARIARAETMTFRNSDF 201

Query: 203 VEAARVMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLG 262
           + A ++MG    RI+ +H++P CLS ++V  T+ +A  I++ A L FLGLG     P  G
Sbjct: 202 IAAVKLMGASPFRIVLKHVMPLCLSSLIVRVTLDMAGIILTAAGLGFLGLGAQPPLPEWG 261

Query: 263 SLISIGFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
           ++I+ G  +I    WW+ A PGI ++++ L  NLLGD LRD  +PK
Sbjct: 262 AMIASGRRFILD-QWWVAAMPGIAILIVSLGFNLLGDGLRDALDPK 306