Pairwise Alignments

Query, 312 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 300 a.a., ABC transporter, membrane spanning protein (dipeptide) from Agrobacterium fabrum C58

 Score =  174 bits (442), Expect = 2e-48
 Identities = 102/281 (36%), Positives = 157/281 (55%), Gaps = 20/281 (7%)

Query: 28  VAMSSFAVFVLFVIVAISAPLIAPTNPYDLSSIDIMDAELPPSWMEGGNEHFLLGTDEQG 87
           +A+    + VLF+ +++ AP IAP   YD ++ ++ +    P+      EH+  GTDE G
Sbjct: 38  LAVIGLTIIVLFIALSLLAPAIAP---YDPATQNLGNRLAFPN-----AEHWF-GTDELG 88

Query: 88  RDIFSTILYGSRLSLTIGFLAVGLQLTLGIVIGLSAGYFGGRIDSFLMRFADIQLSFSTM 147
           RDI S ILYG R++L +    V L   +G+ IG  AGYFGG +D+ LMR  D+ L+F  +
Sbjct: 89  RDILSRILYGGRVTLGMVIAVVVLVAPIGLAIGCIAGYFGGIVDTVLMRVTDVFLAFPRL 148

Query: 148 MVAIIVSAIFKASFGGEFFSQYAVVMLVVIIGVAEWPQYARTVRASVLAEKKKEYVEAAR 207
           ++A+   A  K            V   ++ I +  WP YAR  RA  +  +  ++V A R
Sbjct: 149 ILALAFVAALKPG----------VESAILAIALTAWPPYARLARAETMTVRGSDFVAAYR 198

Query: 208 VMGFKAPRIMFRHILPNCLSPILVISTVQVANAIMSEAALSFLGLGLPVDQPSLGSLISI 267
           + G  A RI+ RHI P C+  ++V  T+ +++ I++ A+L FLG+G     P  G++I+ 
Sbjct: 199 LTGASAWRIIARHIAPLCVPSLIVRITLDMSSIIITAASLGFLGMGAQPPSPEWGAMIAT 258

Query: 268 GFTYIFSGAWWITAFPGIVLVLLVLVINLLGDWLRDVFNPK 308
              +IF   WW+   PGI + L+ L  N LGD LRDV +PK
Sbjct: 259 AKRFIFE-QWWVATIPGIAIFLVSLAFNFLGDGLRDVLDPK 298