Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  211 bits (537), Expect = 2e-59
 Identities = 116/332 (34%), Positives = 186/332 (56%), Gaps = 14/332 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAF-AIQDNLGDPLRELVGQ-SVSEAERQALRDELGLND 58
           MF F++ R+   +     ++L+AF  I+   GDP+  + G+  +  A    LR   G + 
Sbjct: 1   MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P I++Y  ++   + GDLG S   +   +        AT+EL   A L  ++  +P G+ 
Sbjct: 61  PVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGIL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESG 178
           +A+   S+F   VMA S  G S+P+F   ++L+  FS++LGW P  GR      +  E+G
Sbjct: 121 AAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETG 180

Query: 179 FFTLDGLR------------HLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAK 226
           F  +D LR            HL+LP++ L ++ L +  R+ RS MLEVL  +YI+ A+AK
Sbjct: 181 FLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAK 240

Query: 227 GLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDT 286
           GL   ++   HAL+N ++PV+TV G+Q+G +    ILTET+F WPG G   +EAI R D 
Sbjct: 241 GLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDY 300

Query: 287 PLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           P++   ++ +G I ++ N +VD+ YG+INP +
Sbjct: 301 PVLQGGMLLLGGIVMLVNLLVDVAYGVINPRI 332