Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  192 bits (487), Expect = 1e-53
 Identities = 116/314 (36%), Positives = 176/314 (56%), Gaps = 4/314 (1%)

Query: 8   RLYQAL-IVMFVISLVAFAIQDNLGDPLRELVGQS--VSEAERQALRDELGLNDPFIIKY 64
           RL QAL +V+ V+ L    +    GDP+  + G S  +S      LR + GL+    ++ 
Sbjct: 13  RLLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLDKSLPVQL 72

Query: 65  SRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSAIHPK 124
           + ++    QGDLG SYFF  P  ++I ++L ATL LV  + L+       LGV S+  P 
Sbjct: 73  AVYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSRKPN 132

Query: 125 SLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGFFTLDG 184
              ++ +   S +G + PVF   IML+ + +     LP  G   +++  G       LD 
Sbjct: 133 GWLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILPVAGM-RSIDSTGAGGFADMLDV 191

Query: 185 LRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALKNTML 244
            +HLVLP++ L+ + L  + RL RS ML+VL S++I+ A+AKGL    + Y+HAL+N +L
Sbjct: 192 AQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADRVVLYKHALRNALL 251

Query: 245 PVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIFVVTN 304
           PV+TV G+Q G ++A  IL ETVF WPG G L  E++ R D P I   ++F  ++ VV N
Sbjct: 252 PVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILGVLLFSSIVVVVMN 311

Query: 305 TIVDLLYGLINPTV 318
            + DL Y  I+P +
Sbjct: 312 QLTDLCYRFIDPRI 325