Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  185 bits (470), Expect = 1e-51
 Identities = 97/321 (30%), Positives = 181/321 (56%), Gaps = 9/321 (2%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAI-QDNLGDPLRELVGQSVSEAERQALRDELGLNDP 59
           +F ++  R    L+V+ +++++ F + +   GDP+  L+G   + A+   ++ E GL+ P
Sbjct: 5   LFRYIASRAAGMLVVLAIVAVLVFVLTRAASGDPVSVLLGDQATAADIARVQKEYGLDKP 64

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
             +++  ++   +QG+LGTS F +RP  + ++++   T  L   A  I  +  +P G+ S
Sbjct: 65  LPVQFGYWLREVLQGNLGTSIFLQRPVTQALWERSEPTTLLALMAVAIAALIGVPCGIVS 124

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A+    +  ++    + +G SIP F   I+L+ +F++  GW P  G G        ++ F
Sbjct: 125 AVFRGRVVDQLFTGIAMLGASIPSFWLGIVLIQIFAVSFGWFPVSGYGAP------DAPF 178

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
              + L  LVLP+  L  +   L IR  R+ ML+VL  +Y++ A++KGL  + +  +HAL
Sbjct: 179 --AERLHSLVLPATVLGLLNSALIIRFTRASMLDVLGEDYVRTARSKGLSESVVVLKHAL 236

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           +N ++P++TV G+ +  M+   ++TETVF  PG G L + A+ R D P+I   ++ +  I
Sbjct: 237 RNALVPIVTVIGLTVALMIGGAVITETVFGLPGVGNLVVSAVLRRDYPVIQGALLVIAAI 296

Query: 300 FVVTNTIVDLLYGLINPTVNL 320
           +V+ N  +DLLY +++P V +
Sbjct: 297 YVLINFSIDLLYAVVDPRVKV 317