Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  183 bits (465), Expect = 4e-51
 Identities = 106/320 (33%), Positives = 174/320 (54%), Gaps = 11/320 (3%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAI-QDNLGDPLRELVGQSVSEAERQALRDELGLNDP 59
           M +FL KRL   L V+ V+++  F I +   GDP   + G S +  +   +R +LGL  P
Sbjct: 1   MLTFLGKRLLATLPVLLVVAVAIFMIVRLTPGDPAAVIGGNSATNEDLDRIRVQLGLTRP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
              +++ +    + GDLG S+F  +P  E+I  ++  TL L  G  L+ +  ++PLG  +
Sbjct: 61  LWEQFAIWCNGVLHGDLGFSFFLNKPVTELIGQRMEPTLSLAGGTLLLAVAIALPLGTLA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLG-WESG 178
           A        K VMA S  G S+PVF+   +L+Y+ +++L W P  G     + +G W   
Sbjct: 121 AWRMGGWLDKAVMAFSVAGFSVPVFVVGYVLIYLLAMKLQWFPVQGYRRIADGVGPW--- 177

Query: 179 FFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHA 238
                 L  LVLP + LA   + L  R+ R+ + E L+ ++I+ A+AKG+   ++   HA
Sbjct: 178 ------LHQLVLPCLTLAITYVALLSRVTRAAVSEALTEDFIRTARAKGITELEVLKHHA 231

Query: 239 LKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGL 298
           L+N  +PV+TV GV    ++   ++TETVF  PG G L ++A+   D P++   V+F  +
Sbjct: 232 LRNAAVPVVTVIGVSAALLLGGVVVTETVFAIPGLGQLTVDAVLNRDFPVLQGVVLFFAV 291

Query: 299 IFVVTNTIVDLLYGLINPTV 318
           ++V  N +VDL Y  I+P +
Sbjct: 292 VYVAVNLLVDLSYLFIDPRI 311