Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 336 a.a., ABC-type dipeptide/oligopeptide/nickel transport system, permease component from Pseudomonas protegens RBAN4

 Score =  209 bits (532), Expect = 8e-59
 Identities = 119/332 (35%), Positives = 185/332 (55%), Gaps = 14/332 (4%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           MFSF+ +R+   +   F I+L+ FA+   + GDP+  ++G+   + E  A   + LGLN 
Sbjct: 1   MFSFIARRVGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++     GDLG S   +            ATLEL   A L   V  +  GV 
Sbjct: 61  PLYAQYLDYIGKLAHGDLGESLRTRTSVWSEFTSLFPATLELSMAALLFAGVLGLLAGVI 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESG 178
           +A+   SLF   VM  S  G S+P+F   ++L+  FS+ LGW P  GR + +  +  ++G
Sbjct: 121 AALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPKTG 180

Query: 179 FFTLD------------GLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAK 226
           F  +D             L+HL+LP+I L +I L +  R+ RS MLEVL  +YI+ A+AK
Sbjct: 181 FMLIDTLLAKDTDAFFDALQHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAK 240

Query: 227 GLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDT 286
           GL   ++ + H L+N ++PVLTV G+Q+GT++A  +LTET+F WPG G   +EAI   D 
Sbjct: 241 GLSPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY 300

Query: 287 PLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           P++   ++ +  + ++ N +VD+LYG  NP +
Sbjct: 301 PVVQNGILLIACLVIMVNFVVDILYGFANPRI 332