Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., dipeptide ABC transporter permease DppB from Pectobacterium carotovorum WPP14

 Score =  211 bits (538), Expect = 2e-59
 Identities = 125/336 (37%), Positives = 194/336 (57%), Gaps = 19/336 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           M  F+++RL   +     I+L+ FA    + GDP+  + G+    AER A L  E+GL+ 
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISAERHAQLLAEMGLDK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++   +QGDLG S   + P  E    +  ATLEL   A +  I   IP+GV 
Sbjct: 61  PLWQQYLHYIGGVMQGDLGISLKSRIPVWEEFVPRFKATLELGICAMMFAIAVGIPVGVL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGR-GETVNL----- 172
           +A+   S+F    +  +  G S+P+F   +ML+ + S++L   P  GR  +T+ L     
Sbjct: 121 AAVKRGSIFDHTSVGLALTGYSMPIFWWGMMLIMLVSVQLNLTPVSGRISDTIFLDDSMP 180

Query: 173 ---------LGW-ESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKF 222
                    L W E G F +D ++H++LP+I L +I L + +R+ RS MLEVL  +YI+ 
Sbjct: 181 LTGFMLIDTLFWGEEGDF-IDAVQHMILPAIVLGTIPLAVIVRMTRSAMLEVLGEDYIRT 239

Query: 223 AQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAIN 282
           A+AKGL   ++   HAL+N MLPV+TV G+Q+GTM+A  ILTET+F WPG G   ++A+ 
Sbjct: 240 ARAKGLSRLRVIVVHALRNAMLPVVTVIGLQVGTMLAGAILTETIFSWPGLGRWLIDALQ 299

Query: 283 RVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           R D P++   V+ V  + ++ N +VD+LYG++NP +
Sbjct: 300 RRDYPVVQGGVLLVATMIILVNLLVDVLYGVVNPRI 335