Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., Dipeptide transport system permease protein DppB in protein degradation cluster from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  195 bits (496), Expect = 1e-54
 Identities = 100/319 (31%), Positives = 178/319 (55%), Gaps = 17/319 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           M ++++KRL   +  + +++++ F     L GDP R + G          +R +LGL+ P
Sbjct: 1   MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEADAQVIALVRQQLGLDQP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
             +++  ++T  +QGD GTS   +RP  E I  + + TL L   + +  ++F + +G+ +
Sbjct: 61  LHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLTITSMIWAVLFGMAIGIAA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A+       ++ M  +  GIS P F   ++LM +FS++LGWLP+ G              
Sbjct: 121 AVWRNRWPDRLGMTLAVTGISFPAFALGMLLMQIFSVDLGWLPTVGA------------- 167

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
              D  +H +LPS+ L + +  +  R  RS  ++VLS +Y++ A+AKG+    +  +H L
Sbjct: 168 ---DSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWVVLKHGL 224

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           +N M+PV+T+ G+Q G ++  +I+ E VF WPG G L +++++  D P+I A V+   L 
Sbjct: 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQAEVLLFSLE 284

Query: 300 FVVTNTIVDLLYGLINPTV 318
           F++ N +VD+LY  INP +
Sbjct: 285 FILINLVVDVLYAAINPAI 303