Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 339 a.a., Dipeptide transport system permease protein DppB (TC 3.A.1.5.2) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  204 bits (518), Expect = 3e-57
 Identities = 120/336 (35%), Positives = 188/336 (55%), Gaps = 19/336 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQA-LRDELGLND 58
           M  F+++RL   +     I+L+ FA    + GDP+  + G+     ER A L  ELGL+ 
Sbjct: 1   MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDK 60

Query: 59  PFIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVY 118
           P   +Y  ++   + GDLG S   + P  +    +  ATLEL   A +  +   IP+GV 
Sbjct: 61  PMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL 120

Query: 119 SAIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGR-------GETVN 171
           +A+   S+F    +  +  G S+P+F   +ML+ + S+     P  GR        +T  
Sbjct: 121 AAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDTNP 180

Query: 172 LLGW---------ESGFFTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKF 222
           L G+         E G F +D L H++LP++ L +I L + +R+ RS MLEVL  +YI+ 
Sbjct: 181 LTGFMLIDTAIWGEEGNF-IDALAHMILPAMVLGTIPLAVIVRMTRSSMLEVLGEDYIRT 239

Query: 223 AQAKGLPLNKIYYQHALKNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAIN 282
           A+AKGL   ++   HAL+N MLPV+TV G+Q+GT++A  ILTET+F WPG G   ++A+ 
Sbjct: 240 ARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQ 299

Query: 283 RVDTPLITAYVIFVGLIFVVTNTIVDLLYGLINPTV 318
           R D P++   V+ V  + ++ N +VDLLYG++NP +
Sbjct: 300 RRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRI 335