Pairwise Alignments

Query, 325 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

Subject, 306 a.a., predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) from Escherichia coli BW25113

 Score =  195 bits (496), Expect = 1e-54
 Identities = 100/319 (31%), Positives = 177/319 (55%), Gaps = 17/319 (5%)

Query: 1   MFSFLVKRLYQALIVMFVISLVAFAIQDNL-GDPLRELVGQSVSEAERQALRDELGLNDP 59
           M ++++KRL   +  +F++S++ F     L GDP R + G        + +R +LGL+ P
Sbjct: 1   MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEADAQVIELVRQQLGLDQP 60

Query: 60  FIIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYS 119
              ++  +++ AVQGD G S   +RP  + I  + + TL L   + +  ++F +  G+ +
Sbjct: 61  LYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLTITSMVWAVIFGMAAGIIA 120

Query: 120 AIHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWLPSYGRGETVNLLGWESGF 179
           A+       ++ M  +  GIS P F   ++L+ VFS+ELGWLP+ G              
Sbjct: 121 AVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELGWLPTVGA------------- 167

Query: 180 FTLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHAL 239
              D  +H +LPS+ L + +  +  R  R+  ++VLS +Y++ A+AKG+    +  +H L
Sbjct: 168 ---DSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWVVLKHGL 224

Query: 240 KNTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLI 299
           +N M+PV+T+ G+Q G ++  +I+ E VF WPG G L ++++   D P+I A ++   L 
Sbjct: 225 RNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQAEILLFSLE 284

Query: 300 FVVTNTIVDLLYGLINPTV 318
           F++ N +VD+LY  INP +
Sbjct: 285 FILINLVVDVLYAAINPAI 303